PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

XP_016495193.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YC

Protein Properties

Length: 349aa MW: 40068.9 Da PI: 4.482

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016495193.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	109.7	1.7e-34	49	150	2	99
NF-YC 2 lksfwekqieka...tdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 l fw++q+e++ +++k ++elPlari++ +k++++vkm+sa++ vl++ka e+fileltlr+w++ae+ krrtlk+ dia a+ + + dfl XP_016495193.1 49 LLCFWKQQVEETlqaSELKkKQELPLARIRRAIKSNDQVKMVSAHSIVLFAKATEMFILELTLRAWMQAEQVKRRTLKRYDIARAIRNEELLDFL 143 568***886511156665789******************************************************************** PP NF-YC 93 vdivprd 99 divp + XP_016495193.1 144 CDIVPLQ 150 **976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.19E-21	68	149	IPR009072	Histone-fold
Pfam	PF00808	3.7E-13	70	134	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	3.6E-27	72	148	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MEFPKSSSAL SSEMQKPVGI HSCLPSNNKT QQDEDKREPC FMHLLRAKLL CFWKQQVEET 60 LQASELKKKQ ELPLARIRRA IKSNDQVKMV SAHSIVLFAK ATEMFILELT LRAWMQAEQV 120 KRRTLKRYDI ARAIRNEELL DFLCDIVPLQ SYKFQVEEAN YGQGNEFHPA YQMVQPINFP 180 NLQYQFQVEE EANDGQGNEF HPAYEMLQLQ PNNIPLQYQF QVEEESLDVQ GNEFHQSYQM 240 VQPNNIPQQN QFQVEEEAND GQGNDFLAAY HMVQPNDVPY QFQVEEEANG GEGNQFHQAY 300 QMVQPNNIPA SFTSIQGIPA PLMLPPAINS SAEAEFSSDG FALDNKEGL

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MEFPKSSSAL SSEMQKPVGI HSCLPSNNKT QQDEDKREPC FMHLLRAKLL CFWKQQVEET  60
LQASELKKKQ ELPLARIRRA IKSNDQVKMV SAHSIVLFAK ATEMFILELT LRAWMQAEQV  120
KRRTLKRYDI ARAIRNEELL DFLCDIVPLQ SYKFQVEEAN YGQGNEFHPA YQMVQPINFP  180
NLQYQFQVEE EANDGQGNEF HPAYEMLQLQ PNNIPLQYQF QVEEESLDVQ GNEFHQSYQM  240
VQPNNIPQQN QFQVEEEAND GQGNDFLAAY HMVQPNDVPY QFQVEEEANG GEGNQFHQAY  300
QMVQPNNIPA SFTSIQGIPA PLMLPPAINS SAEAEFSSDG FALDNKEGL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_C	2e-24	46	148	16	118	HapE
4g92_C	2e-24	46	148	16	118	HapE
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016495193.1	0.0	PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X8
TrEMBL	A0A1S4C283	0.0	A0A1S4C283_TOBAC; nuclear transcription factor Y subunit gamma-like isoform X8
STRING	XP_009594862.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	2e-31	nuclear factor Y, subunit C4