PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016495152.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 501aa    MW: 56788.2 Da    PI: 7.9223
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016495152.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012435457123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp C++ F++   L  H r+H
  XP_016495152.1 435 HECPFCDRIFKSGQALGGHKRSH 457
                     78******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.54E-5733No hitNo description
PROSITE profilePS501579.141936IPR007087Zinc finger, C2H2
SMARTSM003550.23931IPR015880Zinc finger, C2H2-like
PfamPF139124.8E-6931IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS501579.74394121IPR007087Zinc finger, C2H2
SMARTSM003550.1294116IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.95E-695116No hitNo description
PfamPF139125.4E-895118IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
SuperFamilySSF576671.95E-6357384No hitNo description
PROSITE profilePS501579.452362389IPR007087Zinc finger, C2H2
SMARTSM0035512362384IPR015880Zinc finger, C2H2-like
PfamPF139124.5E-7362386IPR007087Zinc finger, C2H2
PROSITE patternPS000280364384IPR007087Zinc finger, C2H2
SMARTSM003550.034435457IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.245435457IPR007087Zinc finger, C2H2
PfamPF139129.3E-9435457IPR007087Zinc finger, C2H2
PROSITE patternPS000280437457IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MKEVQDLKFV CKLCNKKYPC GKSLGGHMRS HVLTNSAEFE EKIEPQLEKL QSWNRENQYQ  60
SKFELGGNSG YGLRENPKKT WRAVDSTSPL PQERVCQQCG KVFQSLKALC GHMACHSEKD  120
KGTSYSDTEA EEELRLRTRS KTKRYKRIVV KSSVCLVNDN TINNGSSCVS EIDNEQDQEE  180
IAKCLMMLSR DSWNCVTSFI ESSDNNSVVL ETKSSSTDMR FARKDGLKCV YNQDETPRTK  240
EKVDRDLKLS VLNAEAESEN SDSAYFLDEN TTVESDVSFD GFHRNGNSKW STSKMSDTVW  300
CDESGTDKGK GLNRTKRYPT ASRSEYDYYR IASNSDKCES RKRAKNSSYN PEIENESFKK  360
KYECLNCKKN FSSYQALGGH RPCHKKTNAC IESTNGTGEN SVDAADHDNK HRETLSSRKP  420
ASAEKKIKPK KFKGHECPFC DRIFKSGQAL GGHKRSHFIV STAQNMNQSS PVKKDVDDLL  480
DLNLPAPVEV EDDEHAHLVS W
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016495152.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A1S4C1Y50.0A0A1S4C1Y5_TOBAC; zinc finger protein ZAT4-like
STRINGXP_009598345.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.17e-68C2H2-like zinc finger protein