PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016494890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 228aa MW: 25246.9 Da PI: 10.5087 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.6 | 1.4e-22 | 17 | 62 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +n+sn qvtfskRr+g++KKA+EL++LC+ae+ +++fs+ k+y + XP_016494890.1 17 QNESNLQVTFSKRRAGLFKKASELCTLCGAEIVLVVFSPGKKVYSF 62 79******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-30 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.324 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.97E-32 | 7 | 76 | No hit | No description |
SuperFamily | SSF55455 | 1.07E-25 | 7 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-18 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-24 | 15 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-18 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-18 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MAKRTKGRQK VDMVKMQNES NLQVTFSKRR AGLFKKASEL CTLCGAEIVL VVFSPGKKVY 60 SFGHPCVDSV VDRFLTRNSP PNNGHNQLIV AHRNASVRDL NIELTNIEGI LQMEKNGGEA 120 LQARKRDTGH WWKAPIEELN FFQLRQLKEA IECIKKKVER EAQNQQMVTG NAFPFLTFGC 180 ALAPTGASAR SSYGSYGSFS FQNRVSGLNF GAPFANRSSG STSSVVPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 2e-15 | 7 | 94 | 1 | 88 | Myocyte-specific enhancer factor 2A |
3kov_B | 2e-15 | 7 | 94 | 1 | 88 | Myocyte-specific enhancer factor 2A |
3kov_I | 2e-15 | 7 | 94 | 1 | 88 | Myocyte-specific enhancer factor 2A |
3kov_J | 2e-15 | 7 | 94 | 1 | 88 | Myocyte-specific enhancer factor 2A |
3p57_A | 2e-15 | 7 | 94 | 1 | 88 | Myocyte-specific enhancer factor 2A |
3p57_B | 2e-15 | 7 | 94 | 1 | 88 | Myocyte-specific enhancer factor 2A |
3p57_C | 2e-15 | 7 | 94 | 1 | 88 | Myocyte-specific enhancer factor 2A |
3p57_D | 2e-15 | 7 | 94 | 1 | 88 | Myocyte-specific enhancer factor 2A |
3p57_I | 2e-15 | 7 | 94 | 1 | 88 | Myocyte-specific enhancer factor 2A |
3p57_J | 2e-15 | 7 | 94 | 1 | 88 | Myocyte-specific enhancer factor 2A |
5f28_A | 3e-15 | 7 | 94 | 2 | 89 | MEF2C |
5f28_B | 3e-15 | 7 | 94 | 2 | 89 | MEF2C |
5f28_C | 3e-15 | 7 | 94 | 2 | 89 | MEF2C |
5f28_D | 3e-15 | 7 | 94 | 2 | 89 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016494890.1 | 1e-171 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 2e-57 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1S4C157 | 1e-169 | A0A1S4C157_TOBAC; agamous-like MADS-box protein AGL62 | ||||
STRING | XP_009630756.1 | 1e-169 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-59 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
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