PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016494854.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 303aa MW: 34218.2 Da PI: 8.5342

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016494854.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.7	1e-05	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k Fs++ L H++ H XP_016494854.1 83 FECHYCSKEFSNSQALGGHQNAH 105 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.94E-7	80	110	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-5	80	109	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	12.009	83	110	IPR007087	Zinc finger, C2H2
Pfam	PF13912	6.2E-6	83	108	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	85	105	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MEKDISFVFH PSCNVGGNES FSKSCMEIKR HKIFGFEFDP CQKYLKGELG DRESVNSSCS 60 TILAGREKQR SNDAKDKPTE KKFECHYCSK EFSNSQALGG HQNAHRKERM RKKRLQLQET 120 KARLSYYLQA FQSTNNNIAN YHGLTSSPYF CDPNLCCDSS DQFTLYEESN ISFSSYDQDS 180 RVLPFHQESC TFTNTHGTRS RENSMAAVMK LSSLPNSASK QGCLVLVCCT RGTLTVDASS 240 HVRGGVHKSV TWLGQEKSVD AELEAQERMR KSANSSHQQL GWSTCAKAQI LRTSSYARAK 300 DWL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016494854.1	0.0	PREDICTED: uncharacterized protein LOC107814042
TrEMBL	A0A1S4C1D4	0.0	A0A1S4C1D4_TOBAC; uncharacterized protein LOC107814042
STRING	XP_009775693.1	1e-124	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5136	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06650.1	6e-14	C2H2 family protein