PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016494841.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 314aa    MW: 34618 Da    PI: 5.6094
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016494841.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11.1e-17233267135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +Cg+ +Tp+WR gp g+ktLCnaCG++y++ +l
  XP_016494841.1 233 CKHCGSETTPQWRTGPMGPKTLCNACGVRYKSGRL 267
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.0E-7819314IPR016679Transcription factor, GATA, plant
SMARTSM004012.3E-17227277IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.941227263IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.76E-14229290No hitNo description
Gene3DG3DSA:3.30.50.102.9E-14231265IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.13E-13232279No hitNo description
PROSITE patternPS003440233258IPR000679Zinc finger, GATA-type
PfamPF003201.6E-15233267IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
METPDFFAGG YSAPVIDSQF EHKPFDSTNN NKNNNHITVD DLLDFSKEDE VMTDAFFNAI  60
AGNSADSSSL TVVDSCNSLV SGGEEHFDGN LSYRSFTDAP FLTSELCVPH DDLAELEWIS  120
NFVEESFSTD DLQNLQFIPA TEGPSTTTTS AENSSSGTVT FSGNYHNTTG SNSPPAFPCK  180
SRSKRSRAAP CGWLSRLLLL PPATTSSLDS NSSLKTTPCR RRESTDTSTG RKCKHCGSET  240
TPQWRTGPMG PKTLCNACGV RYKSGRLVPE YRPAASPTFV STEHSNSHRK VIEIRRQKEL  300
RTNQNQQQQQ LQMW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016494841.10.0PREDICTED: GATA transcription factor 9-like
TrEMBLA0A1S4C1080.0A0A1S4C108_TOBAC; GATA transcription factor
STRINGXP_009631558.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-62GATA transcription factor 9