PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016494817.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 238aa MW: 25806.4 Da PI: 8.7169 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.5 | 3.6e-41 | 57 | 156 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+kll ++p +r da++slvyeA++r+rdPvyG++g i++lqqql++l+ael+ XP_016494817.1 57 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLLEVPVGQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQLQTLQAELN 151 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_016494817.1 152 AIRSE 156 99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.991 | 56 | 157 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.7E-41 | 57 | 154 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MSRESLLLVV NRERLDEIGK KLKTEIDASS QLHMQQQMGR RQILGPAVGT TLNTITPCAA 60 CKLLRRRCAE ECPFSPYFSP HEPQKFAAVH KVFGASNVSK LLLEVPVGQR ADAANSLVYE 120 ANVRLRDPVY GCMGAISTLQ QQLQTLQAEL NAIRSEILRY KYREAANSLI ASISTSVADQ 180 LPQAPPTPPP PPPPLPSVVV VSSSSSTSSV SSLYTPPSSA GANFSATIHN NSISYFDQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-46 | 50 | 164 | 4 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-46 | 50 | 164 | 4 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 5e-81 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009800766.1 | 1e-174 | PREDICTED: LOB domain-containing protein 15-like isoform X1 | ||||
Refseq | XP_016494817.1 | 1e-174 | PREDICTED: LOB domain-containing protein 15-like isoform X1 | ||||
Swissprot | Q8L5T5 | 1e-73 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A1S4C0Z1 | 1e-173 | A0A1S4C0Z1_TOBAC; LOB domain-containing protein 15-like isoform X1 | ||||
TrEMBL | A0A1U7YFN4 | 1e-173 | A0A1U7YFN4_NICSY; LOB domain-containing protein 15-like isoform X1 | ||||
STRING | XP_009800766.1 | 1e-174 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 5e-76 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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