 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_016494648.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
GRAS |
| Protein Properties |
Length: 264aa MW: 30430.3 Da PI: 4.6738 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016494648.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 176.7 | 1.7e-54 | 1 | 253 | 132 | 374 |
GRAS 132 LasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserd 225
La+R++++p+l++T+v+ +++ k ++e+++r++kfA+ +gvpfefnvl ++l++l+ e+L++k++Ea+aVn++ +l ++ +e+ r
XP_016494648.1 1 LATRNDETPHLKLTVVVTESTLVKSVMKEVAQRMEKFARLMGVPFEFNVLgGLNNLKELTKESLNIKEEEAVAVNCIGALRKVE-----VEE-RG 89
89****************9999***************************97788***************************997.....444.88 PP
GRAS 226 evLklvkslsPkvvvvveqeadhnse..........sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace...gaerre 307
+v+++++sl+Pkvv++ve+ead +s +F++ f e+l++y+ f++l++++p +s+er ++Ere +++iv+v+ac g+ e
XP_016494648.1 90 DVIRILQSLNPKVVTIVEHEADFSSXheadfsrtrnDFVKCFEECLRFYTLYFEMLDESFPITSNERLVIERE-CSKSIVKVLACGdqiGEGDGE 183
9********************997777899999999*************************************.89*********7222344679 PP
GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.....eesgslvlgWkdrpLvsvSaWr 374
+e+ ++W+erl+e F+p pl+++a++++++ll+++k g+++ +es ++l+W+d+p+v++SaW+
XP_016494648.1 184 TRERGNQWSERLREL-FSPFPLNDDAVDDVRSLLKRYK-AGWSLVlpqenQESPGIYLTWRDEPVVWASAWK 253
9999*********98.**********************.666665556556688899**************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 264 aa
Download sequence Send
to blast |
LATRNDETPH LKLTVVVTES TLVKSVMKEV AQRMEKFARL MGVPFEFNVL GGLNNLKELT 60
KESLNIKEEE AVAVNCIGAL RKVEVEERGD VIRILQSLNP KVVTIVEHEA DFSSXHEADF 120
SRTRNDFVKC FEECLRFYTL YFEMLDESFP ITSNERLVIE RECSKSIVKV LACGDQIGEG 180
DGETRERGNQ WSERLRELFS PFPLNDDAVD DVRSLLKRYK AGWSLVLPQE NQESPGIYLT 240
WRDEPVVWAS AWKPQEKSME RYDQ
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP010785 | 1e-133 | AP010785.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0040B24, complete sequence. |
| GenBank | HG975520 | 1e-133 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
