PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 275aa MW: 31820.2 Da PI: 6.5087

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016494481.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.7e-17	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd l++ ++ +G g+W++ ar+ g++Rt+k+c++rw++yl XP_016494481.1 15 RGSWTVEEDFTLINHIAIHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 62 89********************************************97 PP
2	Myb_DNA-binding	51.6	2.2e-16	68	111	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ XP_016494481.1 68 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 111 7999****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.057	10	62	IPR017930	Myb domain
SuperFamily	SSF46689	2.96E-30	12	109	IPR009057	Homeodomain-like
SMART	SM00717	3.6E-15	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-15	15	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.4E-21	16	69	IPR009057	Homeodomain-like
CDD	cd00167	2.67E-11	17	62	No hit	No description
PROSITE profile	PS51294	23.246	63	117	IPR017930	Myb domain
SMART	SM00717	1.3E-14	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	4.3E-15	68	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.1E-23	70	116	IPR009057	Homeodomain-like
CDD	cd00167	4.89E-7	88	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MDMQHVNEDH MDLKRGSWTV EEDFTLINHI AIHGEGRWNS LARCAGLKRT GKSCRLRWLN 60 YLRPDVRRGN ITLEEQLLIL ELHSRWGNRW SKIAQHLPGR TDNEIKNYWR TRVQKHAKQL 120 KCDVNSKQFK DTLRYLWMPR LAERIQASSN SAATTTITTT NNSNNNNNNH VSTSVTQENS 180 SVTASSENSM GTQVSPVSDI SDCCYNNYPI NQNDYGELLI SPTGYFQNGA LDFRTVDYNN 240 QQNMSQWMEG TEDVSDNLWN IEDMLFLQQQ LNNDV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-24	12	109	24	120	MYB TRANSFORMING PROTEIN
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt (NaCl). {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009799770.1	0.0	PREDICTED: transcription factor MYB108-like
Refseq	XP_016494481.1	0.0	PREDICTED: transcription factor MYB108-like
Swissprot	Q9FGY3	2e-88	MYB78_ARATH; Transcription factor MYB78
TrEMBL	A0A1S4C005	0.0	A0A1S4C005_TOBAC; transcription factor MYB108-like
TrEMBL	A0A1U7YLQ8	0.0	A0A1U7YLQ8_NICSY; transcription factor MYB108-like
STRING	XP_009799770.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1397	23	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	1e-84	myb domain protein 78

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]