 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_016494385.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
WRKY |
| Protein Properties |
Length: 356aa MW: 40490.9 Da PI: 5.3874 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016494385.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 94.7 | 6.7e-30 | 133 | 193 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
dDgy+WrKYGqK++ g+++prsYYrCt++ +C+++k+v+rs++dp ++eitY+g+H+++
XP_016494385.1 133 DDGYSWRKYGQKDILGAKYPRSYYRCTYRlmqNCWATKQVQRSDDDPALFEITYKGSHTCN 193
8***************************9999***************************97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 356 aa
Download sequence Send
to blast |
MDCGFNWEYN SLINELIQGM EHTKQLRAYF SSTVSSDKIQ ELHLHMQIIL SSFENSLSIL 60
KWTDSITQTP QVVVAPPPSI SVDEISPKTD DLNGNFKDND QDLRYVSKKR KQLPTWTEQV 120
RVSAENGFEG PTDDGYSWRK YGQKDILGAK YPRSYYRCTY RLMQNCWATK QVQRSDDDPA 180
LFEITYKGSH TCNQAFNSAA QPTSPEKHEF KKQANNPKIV QSNQMLANLQ ANLRVNTNDL 240
NKKETTCSFP FSPTFSGFVD ENLHFQVSQV DDNLVGGYSP SFVSPTTPES SYFSLPSCQM 300
NGSRRIHSLH HSESDLPDLF SANTSSTSSP IVGLEFPLEH VELDPNFPFD NSEFFR
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 102 | 110 | LRYVSKKRK |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP009295 | 1e-158 | AP009295.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08SLe0011M12, complete sequence. |
| GenBank | HG975520 | 1e-158 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
