PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016493934.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 349aa MW: 39753.7 Da PI: 4.826

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016493934.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.6	7.1e-11	280	320	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rrRR++iN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq XP_016493934.1 280 RRRREKINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 320 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.301	270	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-14	273	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-13	275	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.6E-12	276	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.60E-11	279	324	No hit	No description
Pfam	PF00010	3.0E-8	280	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MESVGAFFDE ECQSLGRMFF TENSDFMFQL HCDNPSDLTW HDEEANKNVT DNTNTQGSFF 60 SSPSHSHNGN LEYFCQENSN DSRGSDGMFF LNNASHEYLQ QYNGVTNLFQ VTNNHPDESP 120 DFYMMGHNNL ENSSVNPSFQ DDDFMKEMVS LKEDIGKQML LKRKFHEVEL QSGAEDQKLE 180 DTKNPKKKSR GSREGPTNKK SVQPKVRKNI QINNEEVGDQ QEINNAAKCK SGQSTSSCSS 240 EEDSNACQEL NTNSDTKSNL NSKTRASRGT ATDPQSLYAR RRREKINERL KILQNLVPNG 300 TKVDISTMLE EAVQYVKFLQ LQIKLLSSDD MWMYAPIAYN GMEMDLSHT

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MESVGAFFDE ECQSLGRMFF TENSDFMFQL HCDNPSDLTW HDEEANKNVT DNTNTQGSFF  60
SSPSHSHNGN LEYFCQENSN DSRGSDGMFF LNNASHEYLQ QYNGVTNLFQ VTNNHPDESP  120
DFYMMGHNNL ENSSVNPSFQ DDDFMKEMVS LKEDIGKQML LKRKFHEVEL QSGAEDQKLE  180
DTKNPKKKSR GSREGPTNKK SVQPKVRKNI QINNEEVGDQ QEINNAAKCK SGQSTSSCSS  240
EEDSNACQEL NTNSDTKSNL NSKTRASRGT ATDPQSLYAR RRREKINERL KILQNLVPNG  300
TKVDISTMLE EAVQYVKFLQ LQIKLLSSDD MWMYAPIAYN GMEMDLSHT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	279	284	RRRREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016493934.1	0.0	PREDICTED: transcription factor bHLH84-like
TrEMBL	A0A1S4BYS4	0.0	A0A1S4BYS4_TOBAC; transcription factor bHLH84-like
STRING	XP_009767140.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA639	22	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.1	5e-52	bHLH family protein