PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016493855.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 299aa MW: 34198.1 Da PI: 8.7388 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.7 | 4.5e-53 | 15 | 144 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeel+++yLkkk++ +k+++ evi+evd++k+ePw+L++++k ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + XP_016493855.1 15 VPPGFRFHPTDEELLHYYLKKKLSFHKFDM-EVIREVDLNKMEPWELQERCKIgstPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCI 108 69****************************.99**************964444222455************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + + +++g++ktLvfy+grap+g+ktdW+mheyrle XP_016493855.1 109 RN-TFKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 144 *9.8899****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.59E-59 | 14 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58 | 15 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-27 | 16 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MASSGGGGGG GGGGVPPGFR FHPTDEELLH YYLKKKLSFH KFDMEVIREV DLNKMEPWEL 60 QERCKIGSTP QNEWYFFSHK DRKYPTGSRT NRATNAGFWK ATGRDKCIRN TFKKIGMRKT 120 LVFYRGRAPH GQKTDWIMHE YRLEDSDENS SEDGWVICRV FKKKNLFKVI ANEGTTDTGS 180 DHLLNSSTSI HQPRTTLITH KDSPYLLQHQ QHSHDHSLNY SHIPTAVATT FPQHEYNSHN 240 NNNIQLAQNF MSLGYNHHPH DFSSGESGLE VANVASSSMN QINNHLPLRG EMDFWSYGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-53 | 15 | 165 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-53 | 15 | 165 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-53 | 15 | 165 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-53 | 15 | 165 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-53 | 15 | 165 | 20 | 170 | NAC domain-containing protein 19 |
3swm_B | 3e-53 | 15 | 165 | 20 | 170 | NAC domain-containing protein 19 |
3swm_C | 3e-53 | 15 | 165 | 20 | 170 | NAC domain-containing protein 19 |
3swm_D | 3e-53 | 15 | 165 | 20 | 170 | NAC domain-containing protein 19 |
3swp_A | 3e-53 | 15 | 165 | 20 | 170 | NAC domain-containing protein 19 |
3swp_B | 3e-53 | 15 | 165 | 20 | 170 | NAC domain-containing protein 19 |
3swp_C | 3e-53 | 15 | 165 | 20 | 170 | NAC domain-containing protein 19 |
3swp_D | 3e-53 | 15 | 165 | 20 | 170 | NAC domain-containing protein 19 |
4dul_A | 3e-53 | 15 | 165 | 17 | 167 | NAC domain-containing protein 19 |
4dul_B | 3e-53 | 15 | 165 | 17 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016493855.1 | 0.0 | PREDICTED: protein BEARSKIN2-like | ||||
Swissprot | Q9SV87 | 1e-113 | BRN2_ARATH; Protein BEARSKIN2 | ||||
TrEMBL | A0A1S4BY81 | 0.0 | A0A1S4BY81_TOBAC; protein BEARSKIN2-like | ||||
STRING | XP_009761820.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA134 | 24 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G10350.1 | 1e-99 | NAC domain containing protein 70 |
Publications ? help Back to Top | |||
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