PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016493751.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 247aa MW: 28596.7 Da PI: 10.2953 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.1 | 1.2e-16 | 135 | 230 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+lt +dv + l +p kfa+ + +g ++++++l++ d+ gr We+k k +++y++++ Wke v +++Lk+gD+++++l++++ f XP_016493751.1 135 FEKELTENDVQGK--LLIPAKFARYFpktisNGHTRRDVKLQFVDPGGRFWEIKW--VKDGSQYFFRGKWKEIVAEHELKSGDIIMIELSHDKHF 225 8999988888865..9*******666*****88889*******************..999999***************************99999 PP ..EEE CS B3 91 elvvk 95 ++k XP_016493751.1 226 PIRFK 230 76665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-18 | 133 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.9E-19 | 133 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.096 | 133 | 233 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.91E-16 | 135 | 231 | No hit | No description |
Pfam | PF02362 | 2.1E-14 | 135 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-12 | 135 | 233 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MRKKSNVDVQ EKAEAKPTSY TGSRTQNLMT PTDEADSFVL ILGHKNVKRR KNINPYYNGD 60 HNMLMYRNSF NVQGREKVMI GDNLMIENKE SVTDAANHSK SSKGSGIKNS FKQMMMCILN 120 RGKPAKEEGR VYSVFEKELT ENDVQGKLLI PAKFARYFPK TISNGHTRRD VKLQFVDPGG 180 RFWEIKWVKD GSQYFFRGKW KEIVAEHELK SGDIIMIELS HDKHFPIRFK KQRNILGSCV 240 TEREGER |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 44 | 50 | KNVKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009792994.1 | 0.0 | PREDICTED: uncharacterized protein LOC104239940 | ||||
Refseq | XP_016493751.1 | 0.0 | PREDICTED: uncharacterized protein LOC107813059 | ||||
TrEMBL | A0A1S4BXX1 | 0.0 | A0A1S4BXX1_TOBAC; uncharacterized protein LOC107813059 | ||||
TrEMBL | A0A1U7Y182 | 0.0 | A0A1U7Y182_NICSY; uncharacterized protein LOC104239940 | ||||
STRING | XP_009792994.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA17009 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50680.1 | 1e-06 | RAV family protein |