PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016493618.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 395aa MW: 44125.1 Da PI: 9.5143

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016493618.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00051	343	362	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk+F ++ L++H++++ XP_016493618.1 343 CAQCGKPF-KPEKLHTHMKSC 362 9*****.********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	9.5E-41	15	169	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MEAQTQGGAE VRRLHIIYFL SRKGRIEHPH LIRVHHFSRN GIRLRDVKRW LGELRGKDMP 60 ESFAWSYKRK YKTGYVWQDL LDEDLITPIS DNEYVLKGSE VSKDVKCGEK GVLATMQKEQ 120 TKQEDHIQDP FMDSSKKTPS EIEEESQNIA SEPSTLTTDS PELQEEEEKD SENKTIQEKV 180 NNFENNSFSS SSSFGSKKTK MKTEDHVKEN GEKISAQSSE KPTKNPSFNK SRSYSNGASS 240 IFRNLITCGA VDTNDSGIVP IRKNRSSFSS SGEKAVSFSS EICRAEKVGG SQRIFGTAWN 300 QQHQHTNGRK SCDGAYSSSK NKNEFGSRRS VSANYKPVNG PNCAQCGKPF KPEKLHTHMK 360 SCKGMKAPAK GANSVTSATE KTSKVDSVSG TFLTH

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MEAQTQGGAE VRRLHIIYFL SRKGRIEHPH LIRVHHFSRN GIRLRDVKRW LGELRGKDMP  60
ESFAWSYKRK YKTGYVWQDL LDEDLITPIS DNEYVLKGSE VSKDVKCGEK GVLATMQKEQ  120
TKQEDHIQDP FMDSSKKTPS EIEEESQNIA SEPSTLTTDS PELQEEEEKD SENKTIQEKV  180
NNFENNSFSS SSSFGSKKTK MKTEDHVKEN GEKISAQSSE KPTKNPSFNK SRSYSNGASS  240
IFRNLITCGA VDTNDSGIVP IRKNRSSFSS SGEKAVSFSS EICRAEKVGG SQRIFGTAWN  300
QQHQHTNGRK SCDGAYSSSK NKNEFGSRRS VSANYKPVNG PNCAQCGKPF KPEKLHTHMK  360
SCKGMKAPAK GANSVTSATE KTSKVDSVSG TFLTH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016493615.1	0.0	PREDICTED: protein UPSTREAM OF FLC-like isoform X1
Refseq	XP_016493618.1	0.0	PREDICTED: protein UPSTREAM OF FLC-like isoform X3
TrEMBL	A0A1S4BXJ3	0.0	A0A1S4BXJ3_TOBAC; protein UPSTREAM OF FLC-like isoform X1
TrEMBL	A0A1S4BXP5	0.0	A0A1S4BXP5_TOBAC; protein UPSTREAM OF FLC-like isoform X3
STRING	XP_009620871.1	0.0	(Nicotiana tomentosiformis)