PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016493615.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 412aa MW: 46061.4 Da PI: 9.7006

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016493615.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00053	360	379	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk+F ++ L++H++++ XP_016493615.1 360 CAQCGKPF-KPEKLHTHMKSC 379 9*****.********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	8.8E-41	32	188	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MVKSCNTPTP QHTLKRLMEA QTQGGAEVRR LHIIYFLSRK GRIEHPHLIR VHHFSRNGIR 60 LRDVKRWLGE LRGKDMPESF AWSYKRKYKT GYVWQDLLDE DLITPISDNE YVLKGSEVSK 120 DVKCGEKGVL ATMQKEQTKQ EDHIQDPFMD SSKKTPSEIE EESQNIASEP STLTTDSPEL 180 QEEEEKDSEN KTIQEKVNNF ENNSFSSSSS FGSKKTKMKT EDHVKENGEK ISAQSSEKPT 240 KNPSFNKSRS YSNGASSIFR NLITCGAVDT NDSGIVPIRK NRSSFSSSGE KAVSFSSEIC 300 RAEKVGGSQR IFGTAWNQQH QHTNGRKSCD GAYSSSKNKN EFGSRRSVSA NYKPVNGPNC 360 AQCGKPFKPE KLHTHMKSCK GMKAPAKGAN SVTSATEKTS KVDSVSGTFL TH

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MVKSCNTPTP QHTLKRLMEA QTQGGAEVRR LHIIYFLSRK GRIEHPHLIR VHHFSRNGIR  60
LRDVKRWLGE LRGKDMPESF AWSYKRKYKT GYVWQDLLDE DLITPISDNE YVLKGSEVSK  120
DVKCGEKGVL ATMQKEQTKQ EDHIQDPFMD SSKKTPSEIE EESQNIASEP STLTTDSPEL  180
QEEEEKDSEN KTIQEKVNNF ENNSFSSSSS FGSKKTKMKT EDHVKENGEK ISAQSSEKPT  240
KNPSFNKSRS YSNGASSIFR NLITCGAVDT NDSGIVPIRK NRSSFSSSGE KAVSFSSEIC  300
RAEKVGGSQR IFGTAWNQQH QHTNGRKSCD GAYSSSKNKN EFGSRRSVSA NYKPVNGPNC  360
AQCGKPFKPE KLHTHMKSCK GMKAPAKGAN SVTSATEKTS KVDSVSGTFL TH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016493615.1	0.0	PREDICTED: protein UPSTREAM OF FLC-like isoform X1
TrEMBL	A0A1S4BXJ3	0.0	A0A1S4BXJ3_TOBAC; protein UPSTREAM OF FLC-like isoform X1
STRING	XP_009620871.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5206	13	15