PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016493472.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 149aa MW: 17063.6 Da PI: 10.365

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016493472.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	58.3	9.5e-19	16	59	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +ienk nrqv+fskRrn ++KKA+EL v++ aev +i+f + +k XP_016493472.1 16 KIENKNNRQVSFSKRRNSVFKKANELAVMTCAEVGIIVFPPGNK 59 79*************************************88777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	7.2E-22	7	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	21.18	7	67	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.23E-22	8	76	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-14	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.3E-20	16	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-14	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-14	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MSTRLIKGRK SVCLAKIENK NNRQVSFSKR RNSVFKKANE LAVMTCAEVG IIVFPPGNKP 60 YFFGHPNVNE TIHKYVCEER SPSPSSQANS RKKNKNLESQ QELFRGPIEK MNYTEASMLK 120 EGLEDLLLKV KNYGTKRGYG YENAKWKAE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016493472.1	1e-107	PREDICTED: agamous-like MADS-box protein AGL61
TrEMBL	A0A1S4BX45	1e-106	A0A1S4BX45_TOBAC; agamous-like MADS-box protein AGL61
STRING	XP_009623634.1	2e-83	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	2e-22	AGAMOUS-like 61