PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016493358.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 544aa    MW: 62112.1 Da    PI: 7.9876
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016493358.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1691.1e-2156131190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fYn YA+++GF++r+ + ++s+ +g++++r+fvCskeg++++              +rtgC a ++v+k ++gkw+++++++eHnHel 
  XP_016493358.1  56 EFYNLYATKLGFRIRIGQLYRSRVDGSVISRRFVCSKEGFQTT--------------SRTGCPAFIRVQKADSGKWVLANVKKEHNHELE 131
                     6***************************************976..............589****************************96 PP
2FAR170.24.8e-22212286189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     +fYn+YA ++GF+vr+ +  +sk++g+it+r+fvCskeg++++              +r+gC a ++++++++g+w v+++++eHnHel
  XP_016493358.1 212 EFYNAYAANLGFKVRIGQLFRSKNDGSITSRRFVCSKEGHQHP--------------SRVGCGAFMRIQRQETGRWLVDRFQNEHNHEL 286
                     6**************************************9998..............4899**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-1756131IPR004330FAR1 DNA binding domain
PfamPF031011.8E-17212286IPR004330FAR1 DNA binding domain
PfamPF105511.5E-27384477IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MSREELDNPM ILRAKPAALA IVNNNNCYHR NNEEEGESKL EPNVGLEFDS AEEAQEFYNL  60
YATKLGFRIR IGQLYRSRVD GSVISRRFVC SKEGFQTTSR TGCPAFIRVQ KADSGKWVLA  120
NVKKEHNHEL ETSGEICPSR VQRKNIPNLK SPVVVVVSTR TGLRSIDEDG PGPSGIIDLK  180
RFKRERIDVE LQPRGSEPYK GLEFTSAGEA YEFYNAYAAN LGFKVRIGQL FRSKNDGSIT  240
SRRFVCSKEG HQHPSRVGCG AFMRIQRQET GRWLVDRFQN EHNHELGLPV DASGRVKGFK  300
EEASSVLENM DLVELNGGLS LVTRGRESRI GSDWYNELFE YFQARQADDM GFFYAVEMHN  360
GRAMSVFWAD ARSRFSCTQF GDAVVFDTTY RKGGSYSVPL ASFIGINHHR QPVLLGCALI  420
AEESEESFTW VFQAWLRAMS GRHPVSIVAD QDRSIQHSIA QVFPGIHHRF SAWQIKATEQ  480
ENIGALLSMN PEFKYEYETC IFQSQTANEF EAAWNVLVNK YNLRKNTWLM EMYRMRKSWV  540
PLHI
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016493358.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like, partial
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLA0A1S4BWY10.0A0A1S4BWY1_TOBAC; protein FAR1-RELATED SEQUENCE 7-like
STRINGXP_009601134.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73472130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]