PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 299aa MW: 32406.9 Da PI: 4.8693

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016493325.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.3	1.6e-17	80	129	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+ +++g XP_016493325.1 80 SYVGVRKRA-WGKWVSEIREPKK---KSRIWLGTFATPEMAARAHDVAAMSIKG 129 79**887.******854...6********************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	5.2E-12	79	129	IPR001471	AP2/ERF domain
CDD	cd00018	2.07E-30	79	137	No hit	No description
SuperFamily	SSF54171	9.81E-20	80	138	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	5.1E-30	80	138	IPR001471	AP2/ERF domain
SMART	SM00380	6.5E-34	80	143	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.286	80	137	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.1E-9	81	92	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.1E-9	103	119	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MAEPTTPNSE SESSSYNSCS LSSTISSSSV LVKNINSKNR LKRCREEEEE NDGQTNVSKC 60 SNSSKKNGGN KTSDGSKHPS YVGVRKRAWG KWVSEIREPK KKSRIWLGTF ATPEMAARAH 120 DVAAMSIKGG SAILNFPQLA DLLPRPATCS PRDVQAAAVK AAHMDHLNPT ESSPAASEAS 180 MTSSSSSLSL VSGITSSSLC DDESTPAELE AEIPPPPPAA AMLAPQHEEL SEIVKLPKLD 240 TSYDSLESTQ EVLRFIESDW WDYGTNCEYY FGGENINMGF TTGLEAVVSN SFESFLWQH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-18	75	138	9	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016493325.1	0.0	PREDICTED: ethylene-responsive transcription factor TINY-like
Swissprot	Q9LYD3	6e-49	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A1S4BWP7	0.0	A0A1S4BWP7_TOBAC; ethylene-responsive transcription factor TINY-like
STRING	XP_009620060.1	1e-173	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	4e-46	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]