PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016493155.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 326aa    MW: 36153.3 Da    PI: 5.7277
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016493155.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix87.61.5e-2739133186
        trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rWt+qe+l+Li+++r  e+r+rrg+         + +p+W++vs+++ ++g++r+p+qC+++w+nl++++kkike+e + ++es+s +++ ++l+
  XP_016493155.1  39 RWTRQEILVLIQGKRVAENRVRRGRtaglelgsgQVEPKWASVSSYCTKHGVNRGPVQCRKRWSNLAGDFKKIKEWECGIKEESESFWVMRNDLR 133
                     8**********************97778888888**********************************************9999999*9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.439105IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.3E-539104IPR009057Homeodomain-like
PfamPF138372.0E-1139128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MALEPLTLAP APFDGDSNGG RQQSVNGADD GNRAPRLPRW TRQEILVLIQ GKRVAENRVR  60
RGRTAGLELG SGQVEPKWAS VSSYCTKHGV NRGPVQCRKR WSNLAGDFKK IKEWECGIKE  120
ESESFWVMRN DLRRERKLPG FFDREVYQIL DRGSGGEEIE EGLALALAPA AAVNEPEALF  180
DSGRSAAADE GLFSDFEQSE AGDKDKHMPI PAPTPISEQQ YQPLPMECHA QGINHQKEPT  240
SNPDGGSAQE GKKRKRGVTD TDEEADNLQH QLAKALERNG NLLSSQLEAQ NAHYQLDREQ  300
RKDHVNSLVA VLDKLADAMV RIADKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250256GKKRKRG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016493155.10.0PREDICTED: trihelix transcription factor ASR3-like isoform X1
SwissprotQ8VZ201e-113ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A1S4BWA60.0A0A1S4BWA6_TOBAC; trihelix transcription factor ASR3-like isoform X1
STRINGXP_009619351.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-112Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]