PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_016493130.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 252aa MW: 27802.4 Da PI: 7.5047

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016493130.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.4	1.2e-13	61	107	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN + +Lr l+P K++Ka+ L k++ +Ik+L XP_016493130.1 61 KNHSEAERRRRERINGHLGTLRNLIPGT-----NKMDKAALLAKVISHIKDL 107 58***********************6.....5**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.624	58	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-11	61	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.63E-4	61	108	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.6E-14	62	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-14	62	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-12	64	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MEFFNSFNGH YEDYGFQGIM TNGSTSSSSL ILDNERGELV KAMVRPGEKG VNPEKALIAL 60 KNHSEAERRR RERINGHLGT LRNLIPGTNK MDKAALLAKV ISHIKDLRVN AAEATKGVLV 120 PTDIDEVCVE QQAEGSGGAT YSVKASLCCE YKHELISDLR QALDTLPLKT VRAEIATLGN 180 RMVSVFVITE GDEGNTNERC QLLVTTVRQA LRSVLDKFYA SEEFSSRSTL SSKRRRVSLL 240 DSSSSSSLGD FW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	71	ERRRRE
2	232	236	KRRRV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	1e-180	HG975446.1 Solanum pennellii chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009786357.1	0.0	PREDICTED: transcription factor bHLH30-like
Refseq	XP_016493130.1	0.0	PREDICTED: transcription factor bHLH30-like
TrEMBL	A0A1S4BW81	0.0	A0A1S4BW81_TOBAC; transcription factor bHLH30-like
TrEMBL	A0A1U7X2H7	0.0	A0A1U7X2H7_NICSY; transcription factor bHLH30-like
STRING	XP_009786357.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11989	21	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	7e-36	bHLH family protein