PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016492825.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 434aa MW: 49634.2 Da PI: 6.124

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016492825.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00035	150	173	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++ +Lk+H + H XP_016492825.1 150 YICSVCGRKCKTNLDLKKHFKQlH 173 89*****************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1010	5.0E-7	70	140	IPR029060	PIN domain-like
PROSITE profile	PS50157	10.907	150	178	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0051	150	173	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	152	173	IPR007087	Zinc finger, C2H2
CDD	cd06167	3.13E-12	164	304	No hit	No description
Gene3D	G3DSA:3.40.50.1010	5.0E-7	235	305	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MLMSTTIFSS IHLKTSSFFP TPLPTKHQNL TFSFKPNSPI APIKWHHINS CAAGQEIDME 60 RTKEGLYTAK PKKVVILWDL DNKPPRGPPY EAAMCLKKVA QSFGEVVDMS AYANRHAFIH 120 LPQWVVEQRR ERRHLDVLER KGAVTPSEPY ICSVCGRKCK TNLDLKKHFK QLHERERQKK 180 LSRMRSLKGK KRQKFKERHV DGNYKYIEAA RSLITPKVGY GLAAELRRAG VFVKTVADKP 240 QAADWALKKQ MQHSMTRGID WLFLVSDDSD FCDMLRRAKE ANLGTVVVGD MDRALGRHAD 300 LWIPWNGVEN GEIKEKDLVL KLERRRESWG RSNARFSVSE FDGGISGEGT SVGTLMDDIV 360 EKLELSSMRI SAFSEGEEDE DEDVEELDEE DWLRARLDQP GDDKYDTEDS LLDSEDEEGD 420 YLLDSDDEDP GQMV

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MLMSTTIFSS IHLKTSSFFP TPLPTKHQNL TFSFKPNSPI APIKWHHINS CAAGQEIDME  60
RTKEGLYTAK PKKVVILWDL DNKPPRGPPY EAAMCLKKVA QSFGEVVDMS AYANRHAFIH  120
LPQWVVEQRR ERRHLDVLER KGAVTPSEPY ICSVCGRKCK TNLDLKKHFK QLHERERQKK  180
LSRMRSLKGK KRQKFKERHV DGNYKYIEAA RSLITPKVGY GLAAELRRAG VFVKTVADKP  240
QAADWALKKQ MQHSMTRGID WLFLVSDDSD FCDMLRRAKE ANLGTVVVGD MDRALGRHAD  300
LWIPWNGVEN GEIKEKDLVL KLERRRESWG RSNARFSVSE FDGGISGEGT SVGTLMDDIV  360
EKLELSSMRI SAFSEGEEDE DEDVEELDEE DWLRARLDQP GDDKYDTEDS LLDSEDEEGD  420
YLLDSDDEDP GQMV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016492825.1	0.0	PREDICTED: uncharacterized protein LOC107812283
TrEMBL	A0A1S4BVD1	0.0	A0A1S4BVD1_TOBAC; uncharacterized protein LOC107812283
STRING	XP_009770731.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12268	15	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-164	C2H2-like zinc finger protein