PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016492350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TALE | ||||||||
Protein Properties | Length: 646aa MW: 71891.2 Da PI: 8.1131 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 2e-09 | 392 | 429 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + XP_016492350.1 392 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 429 554459******************************88 PP | |||||||
2 | BELL | 119.7 | 1.3e-38 | 255 | 326 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rqe q+kkakL+++leeV++rY+qy++q+q+++ssFe+vag+gsak+Yt+lAl+aiS++FrcLkdai++qi XP_016492350.1 255 QRQEFQMKKAKLVTMLEEVEQRYRQYHHQMQIIVSSFEQVAGIGSAKSYTQLALHAISKQFRCLKDAIVGQI 326 699********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.2E-60 | 179 | 324 | IPR006563 | POX domain |
Pfam | PF07526 | 7.5E-48 | 184 | 323 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.05 | 370 | 433 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.28E-12 | 373 | 434 | No hit | No description |
SMART | SM00389 | 4.2E-10 | 373 | 437 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.28E-17 | 374 | 440 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.4E-29 | 376 | 439 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.5E-18 | 390 | 429 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 646 aa Download sequence Send to blast |
MYYQGTSDNI HQAADGNIQT LYLMNPNYIH QGYSNDTQQQ QHQHQHHQQQ IIRHAPLQQA 60 QQHFVGVPLP AVSLHDQNHA QLIHRLWNQS GGGGGNGSHH QSQIIPSSTV VSATSCGGST 120 TDLASQLGFQ RPIIMSPTQQ QQQQQGGLSL SLSPQQQQIS FNNISAQNQV GSNINRGLDG 180 ISSMVLGSKY LKAAQELLDE VVNVGKCIKG SELEKGELMN KESILPLASD VNTSNSGGES 240 SSKQKNGVAE LTTAQRQEFQ MKKAKLVTML EEVEQRYRQY HHQMQIIVSS FEQVAGIGSA 300 KSYTQLALHA ISKQFRCLKD AIVGQIKATS KSLGEEDQSL GEKIEGSRLK FVDHHLRQQR 360 ALQQLGMMQP NAWRPQRGLP ERAVSVLRAW LFEHFLHPYP KDSDKIMLAK QTGLTRSQVS 420 NWFINARVRL WKPMVEEMYL EEMKNNQEQN SSSEENKNKN ESNKEKMVSK SSAPQESGTP 480 TEIATSTIST PPTACGSSFQ AAQAHNFSFL GSLNMENNTT TKKPRNHDMH NNSPSNILSS 540 VDMAETKARD HQSKKGFNPL MDAAAVYTMG EFGRFNPHEQ MAATNFHGNN GVSLTLGLPP 600 NSENLSQQSY QNTIEFNRMS YENIDFQNKR FPSQILPDFV AGNLGT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 5e-16 | 379 | 437 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 5e-16 | 379 | 437 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU686380 | 0.0 | EU686380.1 Solanum palustre BEL5 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016492350.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_016492351.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A1S4BU02 | 0.0 | A0A1S4BU02_TOBAC; BEL1-like homeodomain protein 1 | ||||
STRING | XP_009773899.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1478 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-104 | BEL1-like homeodomain 1 |