 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_016492111.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 312aa MW: 35462.4 Da PI: 9.7307 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016492111.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 89.5 | 1.8e-28 | 69 | 119 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+ rqvtfskRr g+lKK +E+SvLCda+va+i+fs +gklyeys+
XP_016492111.1 69 KRIENKISRQVTFSKRRSGLLKKTHEISVLCDADVALIVFSAKGKLYEYST 119
79***********************************************96 PP
|
| 2 | K-box | 95.4 | 9.1e-32 | 136 | 233 | 2 | 99 |
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96
++++ ++++++ e+++ e+ kL ++ie Lqr++Rh++GedL+s l+e + LeqqL+++lk+iR++Kn+l++e+i++lqkkekelqe+n+ ++k
XP_016492111.1 136 AERKLNANDSEPKENWTLEYPKLMSRIELLQRNIRHYMGEDLDSFGLREFHGLEQQLDTALKRIRTRKNQLMHESISQLQKKEKELQEQNHLMSK 230
5566677888889*******************************************************************************999 PP
K-box 97 kle 99
kl+
XP_016492111.1 231 KLK 233
986 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 31.651 | 61 | 121 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 2.9E-38 | 61 | 120 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 7.59E-33 | 62 | 152 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.83E-41 | 62 | 136 | No hit | No description |
| PROSITE pattern | PS00350 | 0 | 63 | 117 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.2E-29 | 63 | 83 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 2.4E-24 | 70 | 117 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.2E-29 | 83 | 98 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.2E-29 | 98 | 119 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 5.2E-27 | 145 | 232 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 16.08 | 148 | 238 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MYSLLYIYHT NNNPVSSIIL LVGSGKVGNL YAELTLEAIA IGVTRTHNLG SKGLGEVTPL 60
MGRGRVEMKR IENKISRQVT FSKRRSGLLK KTHEISVLCD ADVALIVFSA KGKLYEYSTE 120
SSMESILERY ESYSYAERKL NANDSEPKEN WTLEYPKLMS RIELLQRNIR HYMGEDLDSF 180
GLREFHGLEQ QLDTALKRIR TRKNQLMHES ISQLQKKEKE LQEQNHLMSK KLKGNEKQQT 240
EDAQWGKPNP GQSSTPFILP QIPSQSPPHV PNLTIGGPFQ STGFTSTDEG QTRHGSNSLI 300
PPWMLHHLRN KG
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
