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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016491977.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 385aa MW: 43352.1 Da PI: 7.4248 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 26.8 | 1.5e-08 | 43 | 66 | 2 | 25 |
NAM 2 ppGfrFhPtdeelvveyLkkkveg 25 +pGfrFhPt+eelv +yL++kve+ XP_016491977.1 43 MPGFRFHPTEEELVEFYLRRKVEA 66 79*******************986 PP | |||||||
2 | NAM | 98.8 | 7.8e-31 | 70 | 145 | 53 | 128 |
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + s++++ +glkktLvfy+g+apkg +t+W+m+eyrl XP_016491977.1 70 IGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSENSQSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 145 4789**********************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 33.838 | 10 | 166 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-44 | 42 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.5E-25 | 44 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MAIVPFTSII MSQSQQHEQQ DDTINNINNT IKDDDDHEHD MVMPGFRFHP TEEELVEFYL 60 RRKVEALAAI GEKEWYFYVP RDRKYRNGDR PNRVTTSGYW KATGADRMIR SENSQSIGLK 120 KTLVFYSGKA PKGIRTSWIM NEYRLPQHET ERLQKAEISL CRVHKRSGVE DHPSLPRSLP 180 TTRASSSSSS RGTTNSIKKQ HHQQVVQNSL ISPYVVGQSS QQQIDEKLST ETSASSTSTD 240 HHHHHHVATS LGLNSLSNSY NSIALDPMAG GAVTSTSSLS PFASLVSPSS TGAVVEDLHK 300 LINLDQQVAF HNQQHFHNNP INHIPAVASQ QFLQPQVLPQ HAQPQSLLFQ GSLQSSSSFS 360 DRLWEWSSIQ TDANCKDYQP NNPFK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-41 | 44 | 166 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-41 | 44 | 166 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-41 | 44 | 166 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-41 | 44 | 166 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-41 | 44 | 166 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 6e-41 | 44 | 166 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 5e-33 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016491977.1 | 0.0 | PREDICTED: NAC transcription factor 25-like isoform X2 | ||||
Swissprot | Q9ZVP8 | 4e-93 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | A0A1S4BSW2 | 0.0 | A0A1S4BSW2_TOBAC; NAC transcription factor 25-like isoform X2 | ||||
STRING | XP_009626107.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 2e-85 | NAC domain containing protein 35 |
Publications ? help Back to Top | |||
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