PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016491828.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 137aa MW: 15841.4 Da PI: 10.2998

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016491828.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	70.2	1.9e-22	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 r e +snrqvt++k r gilKKA+E+SvLCd+++++++fs+tgk XP_016491828.1 10 RLETSSNRQVTYCKKRSGILKKAKEISVLCDIDILLLMFSPTGK 53 67899**************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.46	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.5E-26	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.33E-26	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.2E-19	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-18	12	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.2E-19	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.2E-19	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MGRVRINIRR LETSSNRQVT YCKKRSGILK KAKEISVLCD IDILLLMFSP TGKPTLFQGE 60 RSNFDEIIAK FAQLTPQERA KRKLESLETL RKTFKKLDQD VGVQEFLDAS DPSVEELNNQ 120 VKVLQSRLTD VEKRLSW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	1e-16	1	92	1	90	MEF2 CHIMERA
6byy_B	1e-16	1	92	1	90	MEF2 CHIMERA
6byy_C	1e-16	1	92	1	90	MEF2 CHIMERA
6byy_D	1e-16	1	92	1	90	MEF2 CHIMERA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016491828.1	2e-95	PREDICTED: agamous-like MADS-box protein AGL65 isoform X2
Swissprot	Q7X9I0	1e-58	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A1S4BSQ1	4e-94	A0A1S4BSQ1_TOBAC; agamous-like MADS-box protein AGL65 isoform X2
STRING	XP_009615322.1	3e-93	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	4e-61	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]