PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

XP_016491803.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 378aa MW: 40761.3 Da PI: 5.9021

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016491803.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	36.2	1.7e-11	13	89	10	85
DUF260 10 rkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqq 85 +C+k+ Cv+ f + +f +++k++G++ ++l+++ p+e++ +a+++++ eA++r+rdPv Ga++ + l+ XP_016491803.1 13 MECKKEwCVFQ-FFSPFDIPDFLAIKKIYGTKAFGRMLSRVvPDERKAEAIRCITEEARCRIRDPVGGAFREMELLKM 89 38999978875.678888899****************9945666899********************9988875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.0E-10	14	88	IPR004883	Lateral organ boundaries, LOB
Gene3D	G3DSA:3.40.50.720	5.7E-80	135	377	IPR016040	NAD(P)-binding domain
SuperFamily	SSF51735	6.13E-77	137	378	IPR016040	NAD(P)-binding domain
PRINTS	PR00081	9.8E-42	140	157	IPR002347	Short-chain dehydrogenase/reductase SDR
CDD	cd05333	9.29E-109	140	377	No hit	No description
TIGRFAMs	TIGR01830	3.4E-91	141	377	IPR011284	3-oxoacyl-(acyl-carrier-protein) reductase
Pfam	PF13561	4.5E-59	146	376	No hit	No description
PRINTS	PR00081	9.8E-42	215	226	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00080	1.6E-11	215	226	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00081	9.8E-42	262	278	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00080	1.6E-11	268	276	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00081	9.8E-42	285	304	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00080	1.6E-11	285	304	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00081	9.8E-42	306	323	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00081	9.8E-42	339	359	IPR002347	Short-chain dehydrogenase/reductase SDR

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006633	Biological Process	fatty acid biosynthetic process
GO:0055114	Biological Process	oxidation-reduction process
GO:0004316	Molecular Function	3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity
GO:0051287	Molecular Function	NAD binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MACPLHIFLG KEMECKKEWC VFQFFSPFDI PDFLAIKKIY GTKAFGRMLS RVVPDERKAE 60 AIRCITEEAR CRIRDPVGGA FREMELLKMA KPTSTHSSVN SYHQELILGA GFTERIGVRA 120 PVETTEQAGV DAAAKVEGPV VIVTEASRGI GKAIALALGK AGCKVLVNYA ISSKDAEEVS 180 KEIEACGGEA FTFVGNVSKQ EDVESMIKTV VGRWGTVDIL INNAGVTRDT LLMRMNQSQW 240 QEVIEFSLTG VFLCTQAAAK IMMKKKKGRI INISPVVGLV GNAGQDTAKA GVIGLTKSVA 300 KEYASWNITV NVVAPGFIAS DMSAKLSEDI EEEISQSVPL GRCGQPEEVA GLVEFLALNP 360 AASYITGQVL NIDGGMVM

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MACPLHIFLG KEMECKKEWC VFQFFSPFDI PDFLAIKKIY GTKAFGRMLS RVVPDERKAE  60
AIRCITEEAR CRIRDPVGGA FREMELLKMA KPTSTHSSVN SYHQELILGA GFTERIGVRA  120
PVETTEQAGV DAAAKVEGPV VIVTEASRGI GKAIALALGK AGCKVLVNYA ISSKDAEEVS  180
KEIEACGGEA FTFVGNVSKQ EDVESMIKTV VGRWGTVDIL INNAGVTRDT LLMRMNQSQW  240
QEVIEFSLTG VFLCTQAAAK IMMKKKKGRI INISPVVGLV GNAGQDTAKA GVIGLTKSVA  300
KEYASWNITV NVVAPGFIAS DMSAKLSEDI EEEISQSVPL GRCGQPEEVA GLVEFLALNP  360
AASYITGQVL NIDGGMVM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1edo_A	1e-121	139	378	2	244	BETA-KETO ACYL CARRIER PROTEIN REDUCTASE
2cdh_G	1e-121	139	378	2	244	KETOACYL REDUCTASE
2cdh_H	1e-121	139	378	2	244	KETOACYL REDUCTASE
2cdh_I	1e-121	139	378	2	244	KETOACYL REDUCTASE
2cdh_J	1e-121	139	378	2	244	KETOACYL REDUCTASE
2cdh_K	1e-121	139	378	2	244	KETOACYL REDUCTASE
2cdh_L	1e-121	139	378	2	244	KETOACYL REDUCTASE
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT014205	0.0	BT014205.1 Lycopersicon esculentum clone 133382F, mRNA sequence.
GenBank	EU616561	0.0	EU616561.1 Capsicum annuum putative 3-oxoacyl-(acyl-carrier protein) reductase mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016491803.1	0.0	PREDICTED: 3-oxoacyl-[acyl-carrier-protein] reductase 4-like
Swissprot	P28643	1e-128	FABG_CUPLA; 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic
TrEMBL	A0A1S4BSN2	0.0	A0A1S4BSN2_TOBAC; 3-oxoacyl-[acyl-carrier-protein] reductase 4-like
STRING	XP_009616064.1	1e-152	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26620.1	3e-11	LOB domain-containing protein 23

Publications ? help Back to Top
Klein B,Pawlowski K,Höricke-Grandpierre C,Schell J,Töpfer R Isolation and characterization of a cDNA from Cuphea lanceolata encoding a beta-ketoacyl-ACP reductase. Mol. Gen. Genet., 1992. 233(1-2): p. 122-8 [PMID:1376402]