 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_016491526.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 171aa MW: 19868.2 Da PI: 8.6217 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016491526.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60.7 | 2.3e-19 | 14 | 68 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++ ++t++q++ Le F++n++++ +++ +LA++lgL+ rqV +W+qN+Ra++k
XP_016491526.1 14 CHKKRLTQDQVRLLEISFNSNNKLDSNRKSQLAQELGLPPRQVAIWYQNKRARWK 68
567789************************************************9 PP
|
| 2 | HD-ZIP_I/II | 112.7 | 2.3e-36 | 15 | 106 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
+k+rl+++qv+lLE sF++++kL+++rK++la+eLgl prqva+W+qn+RAR+k++ lE+dy+aL++++d+ + +nerL+ eve+L+eel++
XP_016491526.1 15 HKKRLTQDQVRLLEISFNSNNKLDSNRKSQLAQELGLPPRQVAIWYQNKRARWKSQSLEVDYKALQQRLDNAMLDNERLKLEVERLKEELNK 106
69**************************************************************************************9986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009637 | Biological Process | response to blue light |
| GO:0009646 | Biological Process | response to absence of light |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 171 aa
Download sequence Send
to blast |
MSVYXQTRKN NLKCHKKRLT QDQVRLLEIS FNSNNKLDSN RKSQLAQELG LPPRQVAIWY 60
QNKRARWKSQ SLEVDYKALQ QRLDNAMLDN ERLKLEVERL KEELNKAQEM LLAFNTTTNN 120
YSSISSSCDE VGSSCLQLHD QSKHHLDKEL YACLIGDEGH FGHNFFASSM S
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 7 | 17 | RKNNLKCHKKR |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975441 | 1e-111 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
