PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_016491515.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 418aa MW: 48570.3 Da PI: 6.2966

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016491515.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.5	4.1e-24	93	188	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt+q+v++Li+a+++++e+ ++ kk++W++vsk+m+erg +sp+qC++k+++lnkryk+++e+ +++ ++e++++ +++d l XP_016491515.1 93 KWTDQMVRLLITAVSYIGEETAAEYggrrkcsnlHKKGKWKSVSKVMAERGHFVSPQQCEDKFNDLNKRYKRLNEILGRGtSCEVVENPALLDVL 187 7************999988864223344567799******************************************669999999998887 PP trihelix 86 e 86 + XP_016491515.1 188 D 188 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.0E-22	91	214	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MMPGNSCFDL QGSMRANHQQ LQHYQSHSKQ GAINANFPLT IGSMQQDCNQ NISLADQGKS 60 ASDEDEPSFT EDAADGLNDL NRGKKATPWQ RVKWTDQMVR LLITAVSYIG EETAAEYGGR 120 RKCSNLHKKG KWKSVSKVMA ERGHFVSPQQ CEDKFNDLNK RYKRLNEILG RGTSCEVVEN 180 PALLDVLDHV SEKGKEEVRK ILSSKHLHYE EMCSYHNGNR LHLPPDLELQ RSLRLALTSR 240 DEHDDNDVRK HLQDDNDDDD HETHLVEDQD EYEENHSLPR EHRLHGMSGG FSKRIKQCQG 300 HEIVTFGNFL TTVDGNRTFI SQPQKANTDA NQMFSECNKA DILQKQWMDH RSFQLEEQKL 360 QIQAQMLELE KERFNWKRFS RKKDIELEMM RMENERIKLE NECMALELKR KEMLAENV

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MMPGNSCFDL QGSMRANHQQ LQHYQSHSKQ GAINANFPLT IGSMQQDCNQ NISLADQGKS  60
ASDEDEPSFT EDAADGLNDL NRGKKATPWQ RVKWTDQMVR LLITAVSYIG EETAAEYGGR  120
RKCSNLHKKG KWKSVSKVMA ERGHFVSPQQ CEDKFNDLNK RYKRLNEILG RGTSCEVVEN  180
PALLDVLDHV SEKGKEEVRK ILSSKHLHYE EMCSYHNGNR LHLPPDLELQ RSLRLALTSR  240
DEHDDNDVRK HLQDDNDDDD HETHLVEDQD EYEENHSLPR EHRLHGMSGG FSKRIKQCQG  300
HEIVTFGNFL TTVDGNRTFI SQPQKANTDA NQMFSECNKA DILQKQWMDH RSFQLEEQKL  360
QIQAQMLELE KERFNWKRFS RKKDIELEMM RMENERIKLE NECMALELKR KEMLAENV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016491515.1	0.0	PREDICTED: uncharacterized protein LOC107811150
TrEMBL	A0A1S4BRK1	0.0	A0A1S4BRK1_TOBAC; uncharacterized protein LOC107811150
STRING	XP_009799706.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7600	18	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-150	sequence-specific DNA binding transcription factors