PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016491454.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 372aa    MW: 42064.3 Da    PI: 8.3344
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016491454.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.45.8e-06136159123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y+C+ Cg++F ++ +L++H++  H
  XP_016491454.1 136 YPCTLCGEVFQSPIHLEQHQSIkH 159
                     99******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0026136159IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221136164IPR007087Zinc finger, C2H2
PROSITE patternPS000280138159IPR007087Zinc finger, C2H2
SuperFamilySSF563995.08E-14161371No hitNo description
Gene3DG3DSA:3.90.228.106.4E-5174275IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene3DG3DSA:3.90.228.108.0E-5307371IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MATVFRPLFS TFLSVIFLLL HLGCFIFSSA SHNQPSKKRK LPSDHRSKNK ATKVISSSWS  60
YIKRIFSSKP DPIQKITTSP THHNPSIQSP CSSTRSLHKP IFPISSDDPI TRSVYPVPES  120
DICADQLFFP LRNDIYPCTL CGEVFQSPIH LEQHQSIKHA VSELIDGDSG KNIVRIIFKT  180
GWPEKKNNPI IHQILKIHNS KRILTRFEDY REHVKFKASR NVVVKRDERC IADGNELLRF  240
HCTTFMCELG QNGNSSICNQ QYCSVCGIIK SGFSNKMDGI SVQPTSWRAH AAVPEEIEEE  300
FGFMNVKRAM LVCRVIAGRI GCDPDLADKE DPGFDSLVGR ENGVHSRLDE EDELLVFNSR  360
AVLPCFVIVY TV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773098.10.0PREDICTED: uncharacterized protein LOC104223368
RefseqXP_016491454.10.0PREDICTED: uncharacterized protein LOC107811098
TrEMBLA0A1S4BRD70.0A0A1S4BRD7_TOBAC; uncharacterized protein LOC107811098
TrEMBLA0A1U7W3C20.0A0A1U7W3C2_NICSY; uncharacterized protein LOC104223368
STRINGXP_009773098.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118341821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-106C2H2 family protein