PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016491387.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 663aa    MW: 75143.2 Da    PI: 6.5548
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016491387.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.28.3e-20527624296
                     EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                     +kvl++sdv+++gr+vlpk+ ae+h  +++++ ++ + +ed  ++ +W++k+++  ++ks++y+l+ ++ +Fv+angL+egDf+v++   + +++
  XP_016491387.1 527 QKVLKQSDVGNLGRIVLPKREAETHlpQLESRDGISIAMEDiGTSCVWNMKYRFwpNNKSRMYLLE-NTGDFVRANGLQEGDFIVIY--ADiKCG 618
                     79*************************999999********7777*******99777777777777.********************..455888 PP

                     ..EEEE CS
              B3  91 elvvkv 96 
                     +++++ 
  XP_016491387.1 619 KYLIRG 624
                     887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-26520631IPR015300DNA-binding pseudobarrel domain
CDDcd100156.82E-33524625No hitNo description
SuperFamilySSF1019361.39E-21525619IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.4E-17526628IPR003340B3 DNA binding domain
PROSITE profilePS508639.982526628IPR003340B3 DNA binding domain
PfamPF023625.4E-16527623IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MKRELQQLYG YNNNQEMHGF ENINMVTVDD DIQRQHQQQQ QQQTTGFDPI DNTDIWLNNG  60
NEEQHHFNVN DTNYINFSTD FPPLPDFPCM SSSSSTSNSP PTDSSSSTQA EEDHFHKKIQ  120
FDNTVNGDQD SLNVIENLGY MDLIDGNHDF LDPMSSFFQS ENPQKHNQNQ QQQEGEVQFE  180
NEQLSIFQGD SELAVMFFEW LKQNKDYISA EDMRSIKLKR STIESASKRL GSTKEGKKQL  240
LRLILDWVEQ HRLQKNQMSE AVANQENFQN SAPNSNFHYN TVGTDPNACF YPSPWMATPS  300
YNVTNFPDST PVMAGQIPGY IGDPYSNGSL FASHFNQTMS GSASSPASTE YQHMDFTQSW  360
LPSQFAVAAA SQYNQFPDNS DSANNVAVVD QPQSLLGTQY PYQLLDGNGE RLARLGSKEA  420
RKNRMARQRR LPLHHYRHQT QNLRQCNDQS VIMCRENCAI DTGNSPGNWV YWPSASAAPV  480
MMVPQADSPQ SHSTKRPALR SQNHQKHSSA DKRQACKTEK NLKFLLQKVL KQSDVGNLGR  540
IVLPKREAET HLPQLESRDG ISIAMEDIGT SCVWNMKYRF WPNNKSRMYL LENTGDFVRA  600
NGLQEGDFIV IYADIKCGKY LIRGIKVRQN GPKSEGKKPA KKNLRNLSST AASISSPVAQ  660
AVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A1e-365226261105B3 domain-containing transcription factor FUS3
6j9b_D1e-365226261105B3 domain-containing transcription factor FUS3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016491386.10.0PREDICTED: B3 domain-containing transcription factor ABI3-like
RefseqXP_016491387.10.0PREDICTED: B3 domain-containing transcription factor ABI3-like
TrEMBLA0A1S4BR900.0A0A1S4BR90_TOBAC; B3 domain-containing transcription factor ABI3-like
STRINGXP_009609744.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-119B3 family protein