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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016491386.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 663aa MW: 75143.2 Da PI: 6.5548 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.2 | 8.3e-20 | 527 | 624 | 2 | 96 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 +kvl++sdv+++gr+vlpk+ ae+h +++++ ++ + +ed ++ +W++k+++ ++ks++y+l+ ++ +Fv+angL+egDf+v++ + +++ XP_016491386.1 527 QKVLKQSDVGNLGRIVLPKREAETHlpQLESRDGISIAMEDiGTSCVWNMKYRFwpNNKSRMYLLE-NTGDFVRANGLQEGDFIVIY--ADiKCG 618 79*************************999999********7777*******99777777777777.********************..455888 PP ..EEEE CS B3 91 elvvkv 96 +++++ XP_016491386.1 619 KYLIRG 624 887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-26 | 520 | 631 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10015 | 6.82E-33 | 524 | 625 | No hit | No description |
SuperFamily | SSF101936 | 1.39E-21 | 525 | 619 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.4E-17 | 526 | 628 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.982 | 526 | 628 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.4E-16 | 527 | 623 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 663 aa Download sequence Send to blast |
MKRELQQLYG YNNNQEMHGF ENINMVTVDD DIQRQHQQQQ QQQTTGFDPI DNTDIWLNNG 60 NEEQHHFNVN DTNYINFSTD FPPLPDFPCM SSSSSTSNSP PTDSSSSTQA EEDHFHKKIQ 120 FDNTVNGDQD SLNVIENLGY MDLIDGNHDF LDPMSSFFQS ENPQKHNQNQ QQQEGEVQFE 180 NEQLSIFQGD SELAVMFFEW LKQNKDYISA EDMRSIKLKR STIESASKRL GSTKEGKKQL 240 LRLILDWVEQ HRLQKNQMSE AVANQENFQN SAPNSNFHYN TVGTDPNACF YPSPWMATPS 300 YNVTNFPDST PVMAGQIPGY IGDPYSNGSL FASHFNQTMS GSASSPASTE YQHMDFTQSW 360 LPSQFAVAAA SQYNQFPDNS DSANNVAVVD QPQSLLGTQY PYQLLDGNGE RLARLGSKEA 420 RKNRMARQRR LPLHHYRHQT QNLRQCNDQS VIMCRENCAI DTGNSPGNWV YWPSASAAPV 480 MMVPQADSPQ SHSTKRPALR SQNHQKHSSA DKRQACKTEK NLKFLLQKVL KQSDVGNLGR 540 IVLPKREAET HLPQLESRDG ISIAMEDIGT SCVWNMKYRF WPNNKSRMYL LENTGDFVRA 600 NGLQEGDFIV IYADIKCGKY LIRGIKVRQN GPKSEGKKPA KKNLRNLSST AASISSPVAQ 660 AVR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 1e-36 | 522 | 626 | 1 | 105 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 1e-36 | 522 | 626 | 1 | 105 | B3 domain-containing transcription factor FUS3 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016491386.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor ABI3-like | ||||
Refseq | XP_016491387.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor ABI3-like | ||||
TrEMBL | A0A1S4BR90 | 0.0 | A0A1S4BR90_TOBAC; B3 domain-containing transcription factor ABI3-like | ||||
STRING | XP_009609744.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4270 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 1e-119 | B3 family protein |