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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016491364.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GATA | ||||||||
Protein Properties | Length: 369aa MW: 41225.8 Da PI: 6.7328 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.1 | 1.1e-17 | 261 | 295 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l XP_016491364.1 261 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 295 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 2.0E-74 | 14 | 351 | IPR016679 | Transcription factor, GATA, plant |
Gene3D | G3DSA:3.30.50.10 | 5.1E-15 | 254 | 292 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.743 | 255 | 291 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 7.3E-18 | 255 | 305 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.71E-15 | 256 | 319 | No hit | No description |
CDD | cd00202 | 1.82E-14 | 260 | 307 | No hit | No description |
Pfam | PF00320 | 1.4E-15 | 261 | 295 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 261 | 286 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
METPEFFQAS YYNSQFMPEK RFSDAKNGDH FVVEDLLDLP NDDGMVTDGT LDATVTGNSA 60 DSSVVDNSCN SSLSGSNHDP QLPVDNIIGC RNFPDGQFSS EFSVPYDDLA ELEWLSNFVE 120 ESFSSNEMQK IQFIQGMKSR NDNETHQFIP DPNNNRASAA TNPIFNPDMS VPAKARSKRS 180 RMAPGNWASR LLVVSPNSPN NTPNSPMNTT TMQDMSSSSE SGIISCSGKK TVKSSIPKIK 240 KENTQHVPNN NMASNSEGRK CLHCATDKTP QWRTGPMGPK TLCNACGVRY KSGRLVPEYR 300 PAASPTFVLT KHSNSHRKVL EIRRQKEIVR TQQHHQQQQF LPQNMMFDVS SADDYLIHQH 360 IGPDFRQLI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009631501.1 | 0.0 | PREDICTED: GATA transcription factor 9-like | ||||
Refseq | XP_016491364.1 | 0.0 | PREDICTED: GATA transcription factor 9-like | ||||
TrEMBL | A0A1S4BR45 | 0.0 | A0A1S4BR45_TOBAC; GATA transcription factor | ||||
STRING | XP_009631501.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1919 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25830.1 | 4e-77 | GATA transcription factor 12 |