PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016491095.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 786aa MW: 90690.4 Da PI: 7.7229 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.5 | 1.7e-26 | 28 | 115 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 +fY+eYAk++GF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk+++ +gkw+++++++eHnHel p XP_016491095.1 28 EFYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRSsNGKWYIHSFVKEHNHELLP 115 6****************************************999877....9********************9****************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.9E-24 | 28 | 115 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.2E-22 | 228 | 320 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.336 | 508 | 544 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 7.8E-8 | 518 | 542 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.8E-7 | 519 | 546 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 786 aa Download sequence Send to blast |
MESTVAMGNS NVEPRDDMEF DSHDAAYEFY KEYAKSAGFG TAKLSSRRSR ASKEFIDAKF 60 SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRSSNGKW YIHSFVKEHN HELLPAQVHF 120 FRSHRNVDPL KNDAKVRRKK MLASVSKQYG AYQFSGNLEN LFRNQHDRGR SLTLEEGGAQ 180 VLLEFLVQMQ EENPKFFYSV DLNEEHRLRN VFWIDAKGMD NYSNFGDVVS FDTTYFTNKY 240 KIPLVLFIGA NHHVQPTLLG CALIADETVH TFIWLMRTWC LAMGGRGPRI LLSDQNDNIK 300 AAVGAIFPDT GHYFSLWSIL EKIPRRLEYL SLWHDAFMAK FTKCIYRSWT EEQFEHRWWK 360 LIEKFNLRED EWVQSLYENR KLWVPAFMRD VSFASLSTAS RSESMNSFFD KYIQSETSLR 420 DFIGQHKLIL EDWYEEEAKA NFDAWHEMPE LKSPSPFEKQ MLLIYTREIF KKFQVEVLGA 480 AACHLKKESE DGTSITYAVK DFDANQDFMV EWDALRSDIY CSCHSFEYKG YLCRHAIVVL 540 QMSGVFNIPS KYILQRWTNA AMSRHSISER MEDVQAKVRR YNDLCRRAII LGEEGSLTQE 600 SYNIAVGAIK EALKQCATVN VTCETNLRSG SCATLAIQGV NEVCQGNSLA ARELMPYSRA 660 AQTSKGSKRA DPGKERESID NASNKKGKVT LEPEIPNGAQ GVFHQMELLE KFILNIYLMH 720 LIVDELEAIH WTMTRIKLEA FVIHCKKKKD MPGSLDYPTL YPRLTTLLRG GDINKRSVEL 780 LGEMLE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016491088.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 4-like isoform X1 | ||||
Refseq | XP_016491095.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 4-like isoform X1 | ||||
Refseq | XP_016491102.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 4-like isoform X1 | ||||
Swissprot | Q6NQJ7 | 0.0 | FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4 | ||||
TrEMBL | A0A1S4BQD2 | 0.0 | A0A1S4BQD2_TOBAC; protein FAR1-RELATED SEQUENCE 4-like isoform X1 | ||||
STRING | XP_009600660.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76320.1 | 0.0 | FAR1-related sequence 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|