PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016491015.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 446aa    MW: 48946.7 Da    PI: 9.647
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016491015.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05199221223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      Cp Cg++F+  ++L++H+ + H
  XP_016491015.1 199 ACPECGEVFPKIESLEHHQAVrH 221
                     6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.016198226IPR007087Zinc finger, C2H2
PROSITE patternPS000280198221IPR007087Zinc finger, C2H2
SuperFamilySSF563995.37E-21223442No hitNo description
Gene3DG3DSA:3.90.228.102.9E-8224442IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MKKRTTSSFS SSTIVLLFHF LALLFMALLT FTPETSENTQ KQASKRRKKQ QIKQQKEKQK  60
QPSSWDQFKN LLTCKQIENS TVHDPASKNS KLGSCSSICS FRDVVHGNTR VVHRADNSPE  120
SSSLGQETRL LNKNKTSHHH GQSSSSSRSL ARSNGSASST YTTTSSSRGM QFRKLSGCYE  180
CHMIVDPSRY PLPRSTICAC PECGEVFPKI ESLEHHQAVR HAVSELGPED SSRNIVEIIF  240
KSSWLKKENP ICKIERILKV HNTKRTIQRF EDCRDAVKIH AVATGKKNPR CAADGNELLR  300
FYCTSLTCSL GARGSSSLCG SVPSCGVCTL IRHGFQGSKT SGVRTTASSG RAHDCLGSGI  360
AKRRAMLVCR VIAGRVKQPA KDVAASPTME EETCSSSASG LLTNGSAIYD SVAGYAGIYS  420
NLEELYVFNP RAILPCFVVI YEALES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783030.10.0PREDICTED: uncharacterized protein LOC104231688
RefseqXP_016491015.10.0PREDICTED: uncharacterized protein LOC107810718
TrEMBLA0A1S4BQ610.0A0A1S4BQ61_TOBAC; uncharacterized protein LOC107810718
TrEMBLA0A1U7X9B10.0A0A1U7X9B1_NICSY; uncharacterized protein LOC104231688
STRINGXP_009783030.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51952334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-167C2H2-like zinc finger protein