PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_016490925.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 352aa MW: 39661.9 Da PI: 7.0104

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016490925.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	107.5	6.4e-34	195	252	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCts++Cpvkk+vers +dp++v++tYeg+Hnh+ XP_016490925.1 195 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCPVKKRVERSYQDPSIVITTYEGQHNHH 252 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.6E-35	180	254	IPR003657	WRKY domain
SuperFamily	SSF118290	6.54E-30	186	254	IPR003657	WRKY domain
PROSITE profile	PS50811	32.661	189	254	IPR003657	WRKY domain
SMART	SM00774	9.9E-40	194	253	IPR003657	WRKY domain
Pfam	PF03106	1.5E-26	195	252	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MADEIRDFYY HQPFQEDIRL GYNNLYSQTR VGDSNDSSVV QNIHMLDPSF MSYTTTHEFL 60 HGSSSDYANS LGKPFGFSAP STPSDQAFSS IINKDHDVKP VLGAINNNDV IVGGGSETPV 120 TPNSSISNSS SNEAAADDQD SNKSTNNTKK DKEVKEILED GEDASKKENK AKKKEKTQRP 180 PKFAFMTKSE VDHLEDGYRW RKYGQKAVKN SPYPRSYYRC TSQKCPVKKR VERSYQDPSI 240 VITTYEGQHN HHLPSTLRGN VARMLNPSML SSPSPLMAAP QAFHQQLMNM AQMPHQFYGN 300 NAFGINPPTN SSSNMYNQNV ITQHELHQQL QFSPDYGLLQ DMVPSMFLKQ EP

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MADEIRDFYY HQPFQEDIRL GYNNLYSQTR VGDSNDSSVV QNIHMLDPSF MSYTTTHEFL  60
HGSSSDYANS LGKPFGFSAP STPSDQAFSS IINKDHDVKP VLGAINNNDV IVGGGSETPV  120
TPNSSISNSS SNEAAADDQD SNKSTNNTKK DKEVKEILED GEDASKKENK AKKKEKTQRP  180
PKFAFMTKSE VDHLEDGYRW RKYGQKAVKN SPYPRSYYRC TSQKCPVKKR VERSYQDPSI  240
VITTYEGQHN HHLPSTLRGN VARMLNPSML SSPSPLMAAP QAFHQQLMNM AQMPHQFYGN  300
NAFGINPPTN SSSNMYNQNV ITQHELHQQL QFSPDYGLLQ DMVPSMFLKQ EP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-27	187	255	10	78	Probable WRKY transcription factor 4
2lex_A	2e-27	187	255	10	78	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009760855.1	0.0	PREDICTED: probable WRKY transcription factor 71
Refseq	XP_016490925.1	0.0	PREDICTED: probable WRKY transcription factor 71
TrEMBL	A0A1S4BPX5	0.0	A0A1S4BPX5_TOBAC; probable WRKY transcription factor 71
TrEMBL	A0A1U7VG83	0.0	A0A1U7VG83_NICSY; probable WRKY transcription factor 71
STRING	XP_009760855.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1485	24	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	4e-55	WRKY DNA-binding protein 71