PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016490861.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 407aa    MW: 45738.7 Da    PI: 6.4284
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016490861.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.44.1e-30221280159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  XP_016490861.1 221 MNDGCHWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCVEDMSILITTYEGTHNHP 280
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-32206282IPR003657WRKY domain
SuperFamilySSF1182901.44E-27215282IPR003657WRKY domain
PROSITE profilePS5081129.207216282IPR003657WRKY domain
SMARTSM007743.5E-36221281IPR003657WRKY domain
PfamPF031061.0E-26222280IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MDNSRKFGSD EKIETIDLSL KLDHEELSNE VNSSRELSQF DAKIQSKEKE FGKNSKREEY  60
QFSVLQKEMN MMKEENKVLR EAVEQTMKDY YDLQKKFSNT QQNNGKKDPK DLLSLHGTYC  120
IDFDMNKRTD SPASQENDIG DGELGLSLTL LSSGSNASKV EADEERKEKQ EDATTTGYLP  180
IQSSNNSHGS NFGGITSQVM NSPPNRKARV SIRAKCEAAT MNDGCHWRKY GQKIAKGNPC  240
PRAYYRCTVA PGCPVRKQVQ RCVEDMSILI TTYEGTHNHP LPVAMASTAG SFTLVDSSIN  300
PLLSNGTSNL LNQTFFPSPY HIINSSSSPY TSNLRNNLYN HEQYPIVNSF SNTSLSEAAQ  360
LGNSWFPKPS NYERNTIGNN IFTAYKLADI IHNEMGPQFE GNNNNYM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-22208282174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016490861.10.0PREDICTED: probable WRKY transcription factor 9 isoform X1
SwissprotQ9C9F05e-70WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLA0A1S4BPS30.0A0A1S4BPS3_TOBAC; probable WRKY transcription factor 9 isoform X1
STRINGXP_009606133.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72872129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.16e-67WRKY DNA-binding protein 9