PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016490832.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 521aa    MW: 57872.1 Da    PI: 5.2355
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016490832.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS419.43.1e-1281525212374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +elLl+cAeavs+  + +a+ l++ l++ +s +g+pmqRl ay++e+++arl++s+s +yk+l+++e +    se l++++++++++P++kf++ 
  XP_016490832.1 152 KELLLACAEAVSDAYFPAAEVLMNVLEHKVSVSGEPMQRLSAYMLEGIRARLFSSGSIIYKKLKCKEPT---NSELLSYMQVLYHICPYYKFAYT 243
                     689*****************************************************************9...89********************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN  I ea+++e+r+HiiDf+i qG QW+ L+q+La Rp+gpps+RiTgv++++s   +   l+ +gerLak+Ae+++vpfef++ +a +  ++
  XP_016490832.1 244 SANVVIDEAMANENRLHIIDFQIAQGSQWMFLIQSLARRPGGPPSVRITGVDDSQSAhaRGGGLQLVGERLAKVAESCRVPFEFHA-AAISGYEV 337
                     *****************************************************9988889999***********************.888999** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ele+L +++gEalaVn+ + lh+++desvs++++rd++L+lvkslsPk+v++veqe+++n++ F+ rf e+l+yy+a+f+s++a+ pr++++ri+
  XP_016490832.1 338 ELENLYIRNGEALAVNFPYILHHMPDESVSTANHRDRLLRLVKSLSPKIVTLVEQESNTNTAAFVPRFRETLDYYTAMFESIDAGRPRDDKQRIS 432
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      E+++++r++vn++acega+r+erhe ++kW++rl++aGF+p pls ++ + ++ +l+ ++s+ yr+ e++g+l+lgWk+r+L + SaWr
  XP_016490832.1 433 AEEHCVARDVVNIIACEGADRVERHELFGKWSMRLKMAGFTPCPLSPSVGEAINDMLKDYSSN-YRIAESKGALYLGWKNRALATSSAWR 521
                     *************************************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.756125502IPR005202Transcription factor GRAS
PfamPF035141.1E-125152521IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MQASQRPMEK VEQYYYVFNN NSNDTSSSGT QFSCQSQNEQ FFTLDSLPAA GYVIYDSPPA  60
VSVSSNWSPF SPQYSQSTIS DQHHSSDNTY GSPLSGCSGV DGVLSEMANK LLGPESDIDD  120
SSCCSFNDVV SEPSSPTKWN RVLEIASSLD VKELLLACAE AVSDAYFPAA EVLMNVLEHK  180
VSVSGEPMQR LSAYMLEGIR ARLFSSGSII YKKLKCKEPT NSELLSYMQV LYHICPYYKF  240
AYTSANVVID EAMANENRLH IIDFQIAQGS QWMFLIQSLA RRPGGPPSVR ITGVDDSQSA  300
HARGGGLQLV GERLAKVAES CRVPFEFHAA AISGYEVELE NLYIRNGEAL AVNFPYILHH  360
MPDESVSTAN HRDRLLRLVK SLSPKIVTLV EQESNTNTAA FVPRFRETLD YYTAMFESID  420
AGRPRDDKQR ISAEEHCVAR DVVNIIACEG ADRVERHELF GKWSMRLKMA GFTPCPLSPS  480
VGEAINDMLK DYSSNYRIAE SKGALYLGWK NRALATSSAW R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-5715852026378Protein SCARECROW
5b3h_A5e-5715852025377Protein SCARECROW
5b3h_D5e-5715852025377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009629634.10.0PREDICTED: scarecrow-like protein 13
RefseqXP_016490832.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A1S4BPL80.0A0A1S4BPL8_TOBAC; scarecrow-like protein 13
STRINGXP_009629634.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13