PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016490829.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 363aa    MW: 40190.5 Da    PI: 5.2761
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016490829.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.3e-102883281055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  XP_016490829.1 288 RKRRERINERLRILQSLVPNG-----TKVDISTMLEEAVQYVKFLQ 328
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.428278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-14278343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-12283337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-11284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.63E-12287332No hitNo description
PfamPF000106.5E-8288328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEPVGAILSE GEWSSLSGTC STEEADFMAQ LFGNCPNELP NSSNIRLPNF WTSHDQSSMN  60
VGGLTNQVPM YNSLDETKNT MYGFSQGSSD NSGGSGIHFP HFHATLLTND SVKDKMSYPS  120
HQVAPNNVIE ADAIDFLNKE VCNESIESGE NMPESDLHGK GLQLGREYDQ MQVREQDHKM  180
DSSSESSKKR SRLPVNDVPK NKRSVKPKKN MKSNADDEIG NKENHSNVLH RQSSFSCCSE  240
DESNVSNYEL YGLASSDNSK GVSAPLNSNG KSRASRGSAT DPQSLYARKR RERINERLRI  300
LQSLVPNGTK VDISTMLEEA VQYVKFLQLQ IKLLSSDDLW MYSPIAYNGM DLGLDLKIGT  360
PNS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754408e-41HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009777466.10.0PREDICTED: transcription factor bHLH84
RefseqXP_016490829.10.0PREDICTED: transcription factor bHLH84-like
TrEMBLA0A1S4BPM00.0A0A1S4BPM0_TOBAC; transcription factor bHLH84-like
TrEMBLA0A1U7WJM20.0A0A1U7WJM2_NICSY; transcription factor bHLH84
STRINGXP_009777466.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-47bHLH family protein