PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016490571.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 169aa MW: 19071.4 Da PI: 4.3333 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.7 | 7.4e-12 | 60 | 142 | 6 | 96 |
..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 6 tpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 t+ v + ++lp+k +e + + + ++W++ + ++++ +++ Wk+Fv++n+Lk+gD +vF+l++ s+ + ++kv XP_016490571.1 60 TKTTVKPHYGMYLPRKMNKELpaA----G--APAVLTCGRKKWDMFYYSNNNK----FSAEWKKFVDDNDLKVGDALVFELSECSTNKIHFKV 142 556666777788888887666431....2..234556788*******334444....7888*******************9854666555554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.46E-16 | 51 | 146 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-13 | 52 | 146 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.616 | 55 | 148 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.93E-17 | 58 | 146 | No hit | No description |
Pfam | PF02362 | 1.3E-9 | 59 | 140 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.1E-7 | 59 | 148 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MEQELQLSVE TAMESIPSSV HVSNHDDIST PEIESTGIEE IDNGEYWPLS GKPYVDIILT 60 KTTVKPHYGM YLPRKMNKEL PAAGAPAVLT CGRKKWDMFY YSNNNKFSAE WKKFVDDNDL 120 KVGDALVFEL SECSTNKIHF KVQILRGDFP SELLPEDEEG ATDANPIEL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009786634.1 | 1e-124 | PREDICTED: B3 domain-containing protein Os04g0386900-like | ||||
Refseq | XP_016490571.1 | 1e-124 | PREDICTED: B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A1S4BNV1 | 1e-123 | A0A1S4BNV1_TOBAC; B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A1U7XI63 | 1e-123 | A0A1U7XI63_NICSY; B3 domain-containing protein Os04g0386900-like | ||||
STRING | XP_009786634.1 | 1e-123 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1819 | 21 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-08 | B3 family protein |