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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016490393.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 768aa MW: 87268.2 Da PI: 6.1169 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 373.9 | 2.1e-114 | 395 | 766 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA+av+++d + a +lL++++ ++sp gd +qRla++f+ +++arla+++s++ykal ++ts ++ l+a++l+ sP+ k+s XP_016490393.1 395 LRTLLINCAQAVAADDCRSAIELLKQIRLHSSPFGDGNQRLAHCFADGMEARLAGTGSQIYKALVNKKTS---AADFLKAYHLYLASSPFRKLSG 486 6789************************************************************999999...9********************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 ++ N++I+ + ++ rvH+iDf+i +G+QWp+L+q +++R++gpp+lRiTg++ p++g +e++eetg+rLa++A++++vpfe+++ +ak++e+ XP_016490393.1 487 FASNKTIMTKAGNAARVHVIDFGILYGFQWPTLIQRISAREGGPPKLRITGIEFPQPGfrPAERIEETGRRLADYAQTFNVPFEYHA-IAKKWET 580 *********************************************************9*****************************.7****** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++le+L+++++E l+Vn+ ++ ++l+de+v ++s r+ vL+l+++++P+++++ + ++++ F++rf e l ++salfd+lea++pres er+ XP_016490393.1 581 IRLEDLKLEKDEFLVVNCLYRFKNLPDETVLTDSSRTLVLDLIRKINPDIFIHGIVNGAYSAPFFVTRFREVLFHFSALFDMLEANVPRESPERM 675 *********************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +Ere++gre+ nv+aceg er+er et+++W+ r +a F+++p++ ++++ a + + + + ++e++++l+lgWk+r+++++S+W+ XP_016490393.1 676 LIEREIFGREALNVIACEGWERVERPETYKQWQVRNLRARFTQIPFEREVMNRAIEKVTSSYHKDFVIDENNKWLLLGWKGRTIYALSCWK 766 ******************************************************99999999888*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.067 | 369 | 746 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.4E-112 | 395 | 766 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 768 aa Download sequence Send to blast |
MDPRFNSFPT SMNGFSLENQ SLPISSNRWK NNEPRFEAIY QDQKLVNGPR FENNFVPNNV 60 GGVQSVSNDP LPTSSNKALT SDIGAEDEYN EDFDFSDTVL SYINQMLMEE DMEDKTHMLQ 120 ESLEFQAKEK SFYEALGKKY PPSPQQNLSI TYQNDEIPDE YCSGSLYNFT SNSNDSSGYL 180 IDPTVINISN DLDSSYVQGL SVCNGTYSSI SSSSSLNNIV DGFLDSPVSP LHTPDIYNDS 240 HPIWNFRKGV EEANKFLPTN IKLLDNVDIN DLLPLEKRGE SGYVAARVEK RYAGETSPTE 300 PRGRKNPHRD DKDLLEEERS SKQAAVYTES TVRSDEFDIV LLHSLGNGKE ALEAYRESLK 360 NARMKTTVQN GKSKGYNGGK GRGKKYSSKK EVIDLRTLLI NCAQAVAADD CRSAIELLKQ 420 IRLHSSPFGD GNQRLAHCFA DGMEARLAGT GSQIYKALVN KKTSAADFLK AYHLYLASSP 480 FRKLSGFASN KTIMTKAGNA ARVHVIDFGI LYGFQWPTLI QRISAREGGP PKLRITGIEF 540 PQPGFRPAER IEETGRRLAD YAQTFNVPFE YHAIAKKWET IRLEDLKLEK DEFLVVNCLY 600 RFKNLPDETV LTDSSRTLVL DLIRKINPDI FIHGIVNGAY SAPFFVTRFR EVLFHFSALF 660 DMLEANVPRE SPERMLIERE IFGREALNVI ACEGWERVER PETYKQWQVR NLRARFTQIP 720 FEREVMNRAI EKVTSSYHKD FVIDENNKWL LLGWKGRTIY ALSCWKPI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 5e-48 | 401 | 767 | 24 | 379 | Protein SCARECROW |
5b3h_D | 5e-48 | 401 | 767 | 24 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016490393.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
Swissprot | O80933 | 0.0 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A1S4BNC5 | 0.0 | A0A1S4BNC5_TOBAC; scarecrow-like protein 9 | ||||
STRING | XP_009804922.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |