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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016490268.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 263aa MW: 29735.1 Da PI: 7.7243 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.1 | 1.9e-17 | 86 | 135 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr + +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g+ XP_016490268.1 86 YRGVRKRN-WGKWVSEIREPRK---KSRIWLGTYRTAEMAARAHDVAALAIKGH 135 9****887.**********843...6***********************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.3E-31 | 85 | 142 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.275 | 85 | 142 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-36 | 85 | 148 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.83E-32 | 86 | 144 | No hit | No description |
PRINTS | PR00367 | 1.7E-10 | 86 | 97 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.8E-12 | 86 | 135 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-21 | 86 | 143 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.7E-10 | 108 | 124 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MKDLEEQTNL DTLAHYHDFS TSFSSSNGLN SPSTITTKIS IEYKVKKISK RVKEFNCKGT 60 DHIGGTDENR KRKKKEGDDK HPTYSYRGVR KRNWGKWVSE IREPRKKSRI WLGTYRTAEM 120 AARAHDVAAL AIKGHSAYLN FPYLANQLPR PASTSPKDIQ IAAAKAAATT FPEEEMKSRA 180 ESSHEISSPM EPHSSCSSTD LSSENNQEFV KSPSTDKDDT FFNLPDLSFN EVDQIGRYSD 240 PNSTWLQVGA DVGFWLEEPF LFV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-16 | 86 | 146 | 15 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 69 | 73 | RKRKK |
2 | 69 | 75 | RKRKKKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009628141.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF038-like | ||||
Refseq | XP_016490268.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF038-like | ||||
Swissprot | Q8LBQ7 | 3e-55 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A1S4BN00 | 0.0 | A0A1S4BN00_TOBAC; ethylene-responsive transcription factor ERF038-like | ||||
STRING | XP_009628141.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 9e-54 | ERF family protein |
Publications ? help Back to Top | |||
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