PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MIKC_MADS

Protein Properties

Length: 219aa MW: 24766.1 Da PI: 6.5315

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016489895.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.7	1.5e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKAeELSvLCda+va+iifsstgkl++yss XP_016489895.1 9 KKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSS 59 68***********************************************96 PP
2	K-box	36.3	2.4e-13	91	164	18	91
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 + ++a+L kei++ +++R++ Ge+L+ Ls+++LqqLe+ Le +l+++ + K l+e+ e+l+++ e++++ XP_016489895.1 91 NSDYARLTKEISQKSHQLRQMRGEELQGLSVEQLQQLERSLEAGLSRVIENKGMQLMEENERLKQQVMEISNNS 164 5689**************************************************************99998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.1E-38	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.52	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.79E-31	3	85	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.8E-27	3	23	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.39E-39	5	77	No hit	No description
Pfam	PF00319	1.1E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.8E-27	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.8E-27	38	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	10.758	87	177	IPR002487	Transcription factor, K-box
Pfam	PF01486	1.6E-10	92	163	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MVKDKIQIKK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFDYSSS 60 SMKEILERHN LLSKNLQKLE QPSLELQLVE NSDYARLTKE ISQKSHQLRQ MRGEELQGLS 120 VEQLQQLERS LEAGLSRVIE NKGMQLMEEN ERLKQQVMEI SNNSSKHPAI VVAVGSENIY 180 YEERQSSESV NNACNSTSPP PLEDHSSDTS LKLGLPYPG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	1e-19	1	69	1	69	MEF2C
5f28_B	1e-19	1	69	1	69	MEF2C
5f28_C	1e-19	1	69	1	69	MEF2C
5f28_D	1e-19	1	69	1	69	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009631750.1	1e-159	PREDICTED: MADS-box protein JOINTLESS-like isoform X2
Refseq	XP_016489895.1	1e-159	PREDICTED: MADS-box protein JOINTLESS-like isoform X1
Swissprot	Q9FUY6	1e-107	JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBL	A0A1S4BLZ8	1e-157	A0A1S4BLZ8_TOBAC; MADS-box protein JOINTLESS-like isoform X1
STRING	XP_009631749.1	1e-154	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	1e-107	MIKC_MADS family protein

Publications ? help Back to Top
Nakano T,Kato H,Shima Y,Ito Y Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities. Plant Cell Physiol., 2015. 56(6): p. 1097-106 [PMID:25746985]