PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016489252.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 168aa    MW: 19075.9 Da    PI: 9.4912
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016489252.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.000964668123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C++ Fs+   L  H  +H
  XP_016489252.1 46 FECKTCNRQFSSFQALGGHRASH 68
                    89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.15E-844114No hitNo description
PfamPF139121.1E-124570IPR007087Zinc finger, C2H2
SMARTSM003550.24668IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.2424673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
PfamPF139125.3E-1191116IPR007087Zinc finger, C2H2
SMARTSM003550.2792114IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.61992119IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MVVLPIKRER EGEFRTNITT MANYLMLFSS QENHFDTINN SPSRVFECKT CNRQFSSFQA  60
LGGHRASHKK PRLMGELNFH QLPTSPPKPK THECSICGVE FPIGQALGGH MRRHRGMTNE  120
NSIQVPNHVV KKSNNSRRVL CLDLNLTPLE NDLEFKLGKS APVVDCFL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009599326.11e-123PREDICTED: zinc finger protein ZAT11-like
RefseqXP_016489252.11e-123PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD42e-37ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A1S4BK981e-121A0A1S4BK98_TOBAC; zinc finger protein ZAT11-like
STRINGXP_009599326.11e-122(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.19e-40C2H2 family protein