PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016489214.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 601aa    MW: 68249.4 Da    PI: 4.6445
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016489214.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00042572590220
                     EETTTTEEESSHHHHHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                     +C+ Cg+ F ++ +L++H+
  XP_016489214.1 572 SCETCGEEFDTRNQLHKHL 590
                     6*****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1101.0E-22481IPR001623DnaJ domain
SuperFamilySSF465653.4E-23493IPR001623DnaJ domain
SMARTSM002715.4E-21769IPR001623DnaJ domain
PROSITE profilePS5007618.882877IPR001623DnaJ domain
CDDcd062571.06E-17866IPR001623DnaJ domain
PfamPF002262.2E-20974IPR001623DnaJ domain
PRINTSPR006254.4E-141028IPR001623DnaJ domain
PRINTSPR006254.4E-142843IPR001623DnaJ domain
PRINTSPR006254.4E-144969IPR001623DnaJ domain
PROSITE patternPS0063605473IPR018253DnaJ domain, conserved site
SuperFamilySSF576672.38E-13293341No hitNo description
SMARTSM004519.9E-7297331IPR003604Zinc finger, U1-type
PfamPF121713.9E-10300325IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003551.7300324IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280302324IPR007087Zinc finger, C2H2
SMARTSM003555.4571595IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.556571600IPR007087Zinc finger, C2H2
PROSITE patternPS000280573595IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MASSEKRCLY EVLGVNRDCT PDEIRSAYRR LALQRHPDKL VKSGVPESEA TAAFQELVNA  60
YEVLSDARER AWYDSHRSQI LFSSNSGPTN SSNSGSVPDL FSFFSNSVYS GYSDTGKGFY  120
KVYGDLFEKI YQNDLNFART LGIGLPKEAP LMGKLDSPYA QVTAFYNYWL GFVTVMDFCW  180
VDQYDVMAGP NRKSRRVMEE ENKKLRKKAR REYNETVRGL AEFVKKRDKR VIDMQMKRNE  240
EMERKREKER ERKKELEREK AEKAKKYVEP DWAKAEELED EEIEEEWDED GKRKADGNEL  300
YCVVCSKKFK SEKQWKNHEQ SKKHKEKVAS LREAFDDEDD EYEGLVEDGA SEEQKVADGD  360
ITADLSADDG VDELAEQFEG STRIQEDECE DDEVQSSDED ETTSKGLDDG LNYRSGNDSK  420
GVADEPGLDD DEASVLEAMV SGRKSRKNAG PGGSRQASAK NVQGESSNDE MDFMEYNNRR  480
STRRNRGGRR QRNRRPQEEE DEEGGGDVRS YATKVGIDTE LDTAYNESSA FEEPSSESPA  540
ETANDHKGSD VSRNSEKVPS QGMGTSKFSS NSCETCGEEF DTRNQLHKHL GATGHAKLKS  600
R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202210KKLRKKARR
2482495RRNRGGRRQRNRRP
3483494RNRGGRRQRNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016489214.10.0PREDICTED: DNAJ protein JJJ1 homolog
SwissprotQ9C9111e-178JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A1S4BK350.0A0A1S4BK35_TOBAC; DNAJ protein JJJ1 homolog
STRINGXP_009788038.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61101516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-150DNAJ heat shock N-terminal domain-containing protein