PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016489071.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 438aa    MW: 49579.5 Da    PI: 6.4558
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016489071.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.2e-051638123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C  C+++Fs+   L  H+r+H
  XP_016489071.1 16 HYCRVCKRVFSSAGALGGHMRSH 38
                    68********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.9E-61538IPR007087Zinc finger, C2H2
SMARTSM003550.00861638IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.62E-71638No hitNo description
PROSITE profilePS501579.4111638IPR007087Zinc finger, C2H2
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
SuperFamilySSF576671.62E-7187214No hitNo description
SMARTSM003550.18192214IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-7192216IPR007087Zinc finger, C2H2
PROSITE profilePS501579.827192219IPR007087Zinc finger, C2H2
PROSITE patternPS000280194214IPR007087Zinc finger, C2H2
SuperFamilySSF576679.94E-5273300No hitNo description
PfamPF139121.9E-12275299IPR007087Zinc finger, C2H2
SMARTSM003551276298IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058276298IPR007087Zinc finger, C2H2
PROSITE patternPS000280278298IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MVDNSEKNET ISSVVHYCRV CKRVFSSAGA LGGHMRSHGV GDTNRNYGEE ISEQRFMINN  60
NFRRDNKQEG QKHSYNLRAN SNRLFGNRAS EDRDRKSSMW PPNDRGKYVV DETLTLSPVS  120
SPGSSDIERN VQSYNAKSEY YGYDKDQYGS REEDEDEDLA NCLVMLSNKS YDLSDNNKEV  180
ENKAKEVEKC MFQCKACKKI FNSHQALGGH RASHKKVKGC YAAKLDDNNN NNNNDIDIDE  240
DLISPTDLIL HQESNSFQSH SPSSSGSFSR KRSRVHQCSI CYRVFSSGQA LGGHKRCHWL  300
TSSLPETTFI PTFQEIQYHN QEQLFNKPMF TNSDQPLDLN FSAQLGNAAE VGQKLHNPFE  360
HEGPRSYLQL WTDQEVDTNN LNLSLNQKSK VSTEDLSREE NYKAKEAKLS NLKDVNLDGG  420
SSWLQVGIGP TPDIVATL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016489071.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A1S4BJK90.0A0A1S4BJK9_TOBAC; zinc finger protein ZAT1-like
STRINGXP_009591198.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19102243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.13e-24C2H2-like zinc finger protein