PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016489068.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 327aa    MW: 36432.4 Da    PI: 8.7907
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016489068.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2187.9e-06181203123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C++C+k+F+++  L +H   H
  XP_016489068.1 181 YQCGICHKMFKTSQALGSHKTIH 203
                     9******************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.14E-5328No hitNo description
SMARTSM003550.074426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.242431IPR007087Zinc finger, C2H2
PfamPF139123.1E-6426IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.8E-4179203IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.34E-10179203No hitNo description
SMARTSM003550.03181203IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.18181208IPR007087Zinc finger, C2H2
PfamPF139121.1E-4181204IPR007087Zinc finger, C2H2
PROSITE patternPS000280183203IPR007087Zinc finger, C2H2
SuperFamilySSF576671.34E-10232259No hitNo description
Gene3DG3DSA:3.30.160.609.3E-4234259IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.063237259IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.18237259IPR007087Zinc finger, C2H2
PfamPF139123.2E-11237260IPR007087Zinc finger, C2H2
PROSITE patternPS000280239259IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEKHKCKLCS RKFLNGKALG GHMRSHLMAL PLPPKTPPLK QDSGGGRSQS TLSLCSSENQ  60
EEEVLEQKGD DSLGNYGLRE NPKRSFRMID PEFLDGGYVV QDRESETESI KKPTCRRSKR  120
SNKMVVTVEK EKEKSVDFEP LSLFSDSSSE EDIAMCLMML SKDVWKSSQP SKLRPKHGKK  180
YQCGICHKMF KTSQALGSHK TIHKIKNSNS STSIEDSEQK PTKKLLSVKS IMDKKLHECP  240
FCGKLFQSGQ ALGGHKRSHL IMSSSTTGSS SLKLGDSFLV EHSNSAKLPN GFIDLNMPAP  300
MEDEDFSQPD FSAISDADFQ HQENGRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016489068.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A1S4BJI00.0A0A1S4BJI0_TOBAC; zinc finger protein ZAT1-like
STRINGXP_009591197.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.13e-32C2H2-like zinc finger protein