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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016489052.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 364aa MW: 38929.9 Da PI: 8.164 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.4 | 8e-11 | 297 | 342 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s a++L +Av++I+ Lq XP_016489052.1 297 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIRTLQ 342 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.954 | 291 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-14 | 294 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.86E-11 | 295 | 346 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.9E-13 | 296 | 355 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-12 | 297 | 347 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-8 | 297 | 342 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MYPSSTSSSS QNSMSHTTTA GGGSNGGGGL TRYGSAPGAF LTTAVESVIG ANNHDFNLHG 60 SHHQHLGPSR YYSPNMTSSN SLNSESTSKA KEQSSLQRSI GFNDLTIGGG GGGCGVLPAA 120 NSTTPLVRHS SSPARFLNQL AAAAGDTGFS VSMGRGSYNS KGVADSSRGI TRLNSQLSFT 180 RQEVLSQIAE ENEDVEGTST ENGHRKSTHS YATASSFAMG SWEDNNSIMF SVTPSKRAKH 240 ISNDIVNGLD DGETQFQFGL SQTALEMSSM DRLLHIPEDS VPCKIRAKRG CATHPRSIAE 300 RERRTRISGK LKKLQDLVPN MDKQTSYADM LDLAVQHIRT LQDQVQNLNI ELENCKCGCK 360 KSSQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU123519 | 1e-162 | EU123519.1 Nicotiana tabacum MYC mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016489052.1 | 0.0 | PREDICTED: transcription factor bHLH128-like isoform X1 | ||||
Swissprot | Q8H102 | 4e-78 | BH128_ARATH; Transcription factor bHLH128 | ||||
TrEMBL | A0A1S4BJT4 | 0.0 | A0A1S4BJT4_TOBAC; transcription factor bHLH128-like isoform X1 | ||||
STRING | XP_009803686.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6455 | 23 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05805.1 | 5e-71 | bHLH family protein |
Publications ? help Back to Top | |||
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