PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016488770.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 333aa    MW: 38863.4 Da    PI: 4.2813
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016488770.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.25.9e-1597182286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W+++e  +L+e+  e+  +l+r++l++ +W+ev++k+ +  g+e+s ++C++ ++ l+k+ykk+ + ++k   + +s++p+f++++
  XP_016488770.1  97 WSEEESFVLLEVWGERYLELGRRSLRAEDWAEVAEKVtEMIGVEKSEIECRNQLDVLKKKYKKEITKMEKTGGGFHSKWPFFKKMD 182
                     *************************************5568**********************99999988899999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.1E-2096184No hitNo description
PROSITE profilePS510298.58997189IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDDSDDETRY PSRPNSIYTS SLRSRRSIRN PTSYYYGYNN NEFQYDDDDE SDEDEAEQEF  60
SSGENGYDSF QKRRKLETLV SNYEFAPHSH SSKGGMWSEE ESFVLLEVWG ERYLELGRRS  120
LRAEDWAEVA EKVTEMIGVE KSEIECRNQL DVLKKKYKKE ITKMEKTGGG FHSKWPFFKK  180
MDMLMNLRMK GHCGLGCGLD SGEYVFMDPR MYLDRSNVLD EMRDSPAGSD ADNDEEEEEE  240
EQGSGGWEGD NESAKLLADS IQRFGQIYEK IENGKRKQMM ELEKMRRDFQ RELELQKKQI  300
VERAQEEIAK IRDNDDNEDN GDEDGEETDN ISG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016488765.10.0PREDICTED: trihelix transcription factor ASIL2-like isoform X1
RefseqXP_016488766.10.0PREDICTED: trihelix transcription factor ASIL2-like isoform X1
RefseqXP_016488770.10.0PREDICTED: trihelix transcription factor ASIL2-like isoform X4
TrEMBLA0A1S4BIQ80.0A0A1S4BIQ8_TOBAC; trihelix transcription factor ASIL2-like isoform X1
TrEMBLA0A1S4BIR10.0A0A1S4BIR1_TOBAC; trihelix transcription factor ASIL2-like isoform X4
STRINGXP_009590626.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.13e-79Trihelix family protein