PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016488565.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 483aa MW: 54507.7 Da PI: 7.956 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.3 | 4.8e-31 | 68 | 125 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDg++WrKYGqK vkgs+fprsYY+Ct+++Cpv+kkve++ +++v+ei+Y+g Hnh+k XP_016488565.1 68 DDGFTWRKYGQKRVKGSNFPRSYYKCTQQSCPVRKKVECAP-NGQVIEIVYNGAHNHPK 125 8****************************************.***************85 PP | |||||||
2 | WRKY | 102.6 | 2.2e-32 | 276 | 333 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+vkg+++prsYY+Ct agC v+k+ver++++ k v++tYeg+Hnhe XP_016488565.1 276 EDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCIVRKHVERASDNLKSVITTYEGKHNHE 333 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.5E-27 | 57 | 125 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.84E-24 | 65 | 125 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.3E-33 | 67 | 125 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.574 | 68 | 126 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-24 | 68 | 124 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.5E-34 | 260 | 335 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.06E-28 | 268 | 335 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 36.862 | 270 | 335 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-36 | 275 | 334 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.0E-25 | 276 | 333 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
MLGSQMWFQG NEFIQQIKTP TETNVQQTLN SIELTNKQIP QQEEFTKKEN QFEQNGVFSS 60 SISPSSSDDG FTWRKYGQKR VKGSNFPRSY YKCTQQSCPV RKKVECAPNG QVIEIVYNGA 120 HNHPKTQSIR RPNMDNSYVI REVEEIGQEN ASVWRNQQFE CNKNVISYND NGLKRTSSAS 180 VLTEVSDPMS TNPKSMNVFE SAGTPELSST LTSYDGDDGD WATQESTLLG DDVNEYELEP 240 KRRKKESYSA EPSLLSRTVR ESKVVLQVES EIDILEDGYR WRKYGQKVVK GNPNPRSYYK 300 CTNAGCIVRK HVERASDNLK SVITTYEGKH NHEVPTANKT NGVAGHIRSA STLNGQPNCM 360 TTRKSVKGSN CRMQVQDLPF PFERKPFVGS EYLRPSFVGS YLGDLSFGAC SLQLPNFPLP 420 LPSRMSFPAR LNEPPLGDFH LNNHHLLPNG TSNSFLAVGN MQHINDDNNN SSLLKAKEEI 480 QWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-33 | 68 | 335 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 8e-33 | 68 | 335 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 239 | 245 | PKRRKKE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238789 | 7e-48 | AC238789.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 5 clone C05HBa0142A20, complete sequence. | |||
GenBank | HG975444 | 7e-48 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. | |||
GenBank | HG975517 | 7e-48 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009615391.1 | 0.0 | PREDICTED: probable WRKY transcription factor 2 isoform X3 | ||||
Refseq | XP_016488565.1 | 0.0 | PREDICTED: probable WRKY transcription factor 2 | ||||
TrEMBL | A0A1S4BI65 | 0.0 | A0A1S4BI65_TOBAC; probable WRKY transcription factor 2 | ||||
STRING | XP_009615387.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5767 | 22 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.1 | 6e-71 | WRKY DNA-binding protein 4 |