PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016488419.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 336aa    MW: 37670.8 Da    PI: 10.2629
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016488419.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.62.1e-1562152186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  +++Lie   ++  +l+rg+l+ ++W+ev++++     + ++  r+ +qCk++++ l+k+yk +k++ ++ + + +st+p+f++l+
  XP_016488419.1  62 CWSEAATHTLIETWGSKYVELNRGNLRHQQWREVADAVnalhgHTKKQYRTDIQCKNRIDTLKKKYKIEKTRVSQSQGRYVSTWPFFSSLN 152
                     7*************************************999987778889*************************9999********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.7E-2460152No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MSDDDDHLAS PFSIKNSPSS SPSPSPPPPC TDDKLLALPL PPMLTPASVS ARTPVFPARE  60
DCWSEAATHT LIETWGSKYV ELNRGNLRHQ QWREVADAVN ALHGHTKKQY RTDIQCKNRI  120
DTLKKKYKIE KTRVSQSQGR YVSTWPFFSS LNPLIGVTYK VSPSPSPETF IPQRRKSPSP  180
SPATFTPQWR SSPPLLPPPL FGIPVGLRSK RPAAAMDYTV SRRNFSAMAA AAAAASEDSG  240
EEDEEGLEKS SRKRSGGVVV EGGGYRRIAE AIGRFGEIYE RVEKAKQRQM VELEKQRMQF  300
AKDLEIQRMK LIMESQLHLQ KLNRSKPHFT SRQSQT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016488419.10.0PREDICTED: trihelix transcription factor ASIL2-like isoform X1
TrEMBLA0A1S4BHS00.0A0A1S4BHS0_TOBAC; trihelix transcription factor ASIL2-like isoform X1
STRINGXP_009603664.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13182370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.18e-64sequence-specific DNA binding transcription factors