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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016488300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 867aa MW: 98370.9 Da PI: 9.7223 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.1 | 1.2e-11 | 38 | 117 | 13 | 98 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +rl++p +fa+++ ++ ++ + le +sg++Wev++ ++gr+ l+ GW++F + + g f++F ++ rs f +v++f+ XP_016488300.1 38 CSRLRIPEDFASKYCKNMLNP--VYLEVPSGEVWEVEV--VHSQGRICLGIGWQDFSDFYSISCGHFLIFGYNARSHF--NVTIFD 117 468***********5454444..***************..999999**************************999999..999987 PP | |||||||
2 | B3 | 43 | 8.3e-14 | 263 | 345 | 4 | 92 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 + ps+v++ +l++p kfa+++ +++ + l+l + sW+vk+++ + +++ Wk Fv +n+Lk gD++vF++++ ++ + XP_016488300.1 263 FMQPSYVFSPFNLSMPLKFARKYFLENYG--NLVLHVPGRGSWSVKCTFGTTNAKIF----WKAFVMDNKLKPGDVCVFEVIKGTKLLM 345 6889*******************877655..6***************8866655554....*******************887555444 PP | |||||||
3 | B3 | 48.7 | 1.4e-15 | 508 | 595 | 6 | 97 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ps+v+k +l ++ +fa+++ ++ + +l+ + sW+v++ + ++s+ +++GWk Fv++n+Lk gD++vF++++ ++ + v++f XP_016488300.1 508 QPSYVSKPYNLNISATFAKKYFRDEYS--NFVLRVPGRGSWSVEC-FLGTSK-AQIRSGWKAFVQDNKLKYGDVCVFEVIKVTKLLMDVTIF 595 6899*****************777555..69**************.444443.459**********************99877776666666 PP | |||||||
4 | B3 | 41.7 | 2e-13 | 760 | 850 | 5 | 99 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + ps+vl+ rl ++ fa+++ +k ++ l+l+ + sW+vk+i k++ ++ + Wk Fv +n+Lk gD++vF+l++ ++ l v++fr+ XP_016488300.1 760 MQPSYVLTPYRLDISFLFARKYVWEK-CG-FLVLRVPGRGSWSVKYILGKSKTKICFY--WKAFVLDNKLKFGDVCVFELIKGTKPILDVTIFRT 850 6799******************5443.43.6999******************999999..*********************88777788888885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-17 | 22 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.69E-17 | 25 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.039 | 26 | 119 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.65E-11 | 26 | 117 | No hit | No description |
SMART | SM01019 | 1.2E-8 | 29 | 119 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-8 | 39 | 117 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-16 | 253 | 347 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-16 | 255 | 350 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.74E-17 | 258 | 351 | No hit | No description |
SMART | SM01019 | 2.0E-10 | 260 | 353 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.756 | 260 | 353 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-11 | 262 | 343 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-21 | 495 | 596 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.46E-19 | 496 | 595 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.99E-15 | 501 | 596 | No hit | No description |
SMART | SM01019 | 1.0E-11 | 502 | 598 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.055 | 503 | 598 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-12 | 507 | 595 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-17 | 748 | 849 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.69E-18 | 749 | 849 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.588 | 756 | 851 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.5E-9 | 759 | 851 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-10 | 760 | 849 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.35E-15 | 760 | 849 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 867 aa Download sequence Send to blast |
MAAKPHLQSG EGSSHWKSST AKIPQPKFFK IIFFQHECSR LRIPEDFASK YCKNMLNPVY 60 LEVPSGEVWE VEVVHSQGRI CLGIGWQDFS DFYSISCGHF LIFGYNARSH FNVTIFDLSA 120 SEIEYPYSSA HGIHTPISYS HETRHAQERD QSESDHSVEI HEVIPRSQKA NTITPDMVEN 180 SVENLDHCPL GQSSKRQRQG DAEDVASPSF IRKGQKSSEG CCTHMQQSKI VYDENKTVMD 240 KERAIAYRRA KGFKSKNPFI ISFMQPSYVF SPFNLSMPLK FARKYFLENY GNLVLHVPGR 300 GSWSVKCTFG TTNAKIFWKA FVMDNKLKPG DVCVFEVIKG TKLLMDITIF PAAGEVPGVS 360 DSSVPLSQSR IAQTKNLKQR RGGACGFNSK VKAEEHGEGT GNEHSFEILG HCPLVQYRKR 420 KRLERDAEDD VPIDIHTKNI KVETSHKDVT LPSFRKIKKS GESCRMHKQQ TMIVCGKNKA 480 GMNKERAMAY QRAKAFKSKN PFIISFIQPS YVSKPYNLNI SATFAKKYFR DEYSNFVLRV 540 PGRGSWSVEC FLGTSKAQIR SGWKAFVQDN KLKYGDVCVF EVIKVTKLLM DVTIFPAAGS 600 TPILKIAGEV PGVSDSKRKI INTDIYVPCS PPKVVHTNRL KQRRGEEHDE GTGIESSAEI 660 LGHCPLGHDR KIKRLEEETE DDVSIDIHTK SIKVANTQED VASPSFTRKT KKSGESCQMD 720 KQQSKMVYDK NTTVLDKERT VAYQRAKAFK SENPYVMYFM QPSYVLTPYR LDISFLFARK 780 YVWEKCGFLV LRVPGRGSWS VKYILGKSKT KICFYWKAFV LDNKLKFGDV CVFELIKGTK 840 PILDVTIFRT AESKPIHKID GKLPGLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 6e-14 | 236 | 852 | 23 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 6e-14 | 236 | 852 | 23 | 144 | B3 domain-containing transcription factor VRN1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016488300.1 | 0.0 | PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X1 | ||||
TrEMBL | A0A1S4BHE1 | 0.0 | A0A1S4BHE1_TOBAC; putative B3 domain-containing protein Os03g0621600 isoform X1 | ||||
STRING | XP_009760928.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA759 | 18 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-34 | B3 family protein |